7SW3

MicroED structure of proteinase K from a 95 nm thick lamella measured at 200 kV

Summary for 7SW3

• Entry DOI: 10.2210/pdb7sw3/pdb
• EMDB information: 25461
• Descriptor: Proteinase K (2 entities in total)
• Functional Keywords: serine protease, hydrolase
• Biological source: Parengyodontium album (Engyodontium album, Tritirachium album)
• Total number of polymer chains: 1
• Total formula weight: 28930.78

Authors

Martynowycz, M.W.,Clabbers, M.T.B.,Unge, J.,Hattne, J.,Gonen, T. (deposition date: 2021-11-19, release date: 2022-09-07, Last modification date: 2024-11-13)

Primary citation

Martynowycz, M.W.,Clabbers, M.T.B.,Unge, J.,Hattne, J.,Gonen, T.
Benchmarking the ideal sample thickness in cryo-EM.
Proc.Natl.Acad.Sci.USA, 118:-, 2021

PubMed Abstract: The relationship between sample thickness and quality of data obtained is investigated by microcrystal electron diffraction (MicroED). Several electron microscopy (EM) grids containing proteinase K microcrystals of similar sizes from the same crystallization batch were prepared. Each grid was transferred into a focused ion beam and a scanning electron microscope in which the crystals were then systematically thinned into lamellae between 95- and 1,650-nm thick. MicroED data were collected at either 120-, 200-, or 300-kV accelerating voltages. Lamellae thicknesses were expressed in multiples of the corresponding inelastic mean free path to allow the results from different acceleration voltages to be compared. The quality of the data and subsequently determined structures were assessed using standard crystallographic measures. Structures were reliably determined with similar quality from crystalline lamellae up to twice the inelastic mean free path. Lower resolution diffraction was observed at three times the mean free path for all three accelerating voltages, but the data quality was insufficient to yield structures. Finally, no coherent diffraction was observed from lamellae thicker than four times the calculated inelastic mean free path. This study benchmarks the ideal specimen thickness with implications for all cryo-EM methods.

PubMed: 34873060
DOI: 10.1073/pnas.2108884118

Experimental method

ELECTRON CRYSTALLOGRAPHY (2.35 Å)