7PJ6
Crystal structure of catalytic domain of LytB (E585Q) from Streptococcus pneumoniae in complex with NAG-NAM-NAG-NAM-NAG peptidolycan analogue
This is a non-PDB format compatible entry.
Summary for 7PJ6
| Entry DOI | 10.2210/pdb7pj6/pdb |
| Descriptor | Putative endo-beta-N-acetylglucosaminidase, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-N-acetyl-beta-muramic acid-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-N-acetyl-beta-muramic acid-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, PENTAETHYLENE GLYCOL, ... (7 entities in total) |
| Functional Keywords | glucosaminidase, peptidoglycan hydrolase, hydrolase |
| Biological source | Streptococcus pneumoniae (strain ATCC BAA-255 / R6) |
| Total number of polymer chains | 1 |
| Total formula weight | 32608.19 |
| Authors | Martinez Caballero, S.,Hermoso, J.A. (deposition date: 2021-08-23, release date: 2022-09-07, Last modification date: 2024-02-07) |
| Primary citation | Martinez-Caballero, S.,Freton, C.,Molina, R.,Bartual, S.G.,Gueguen-Chaignon, V.,Mercy, C.,Gago, F.,Mahasenan, K.V.,Munoz, I.G.,Lee, M.,Hesek, D.,Mobashery, S.,Hermoso, J.A.,Grangeasse, C. Molecular basis of the final step of cell division in Streptococcus pneumoniae. Cell Rep, 42:112756-112756, 2023 Cited by PubMed Abstract: Bacterial cell-wall hydrolases must be tightly regulated during bacterial cell division to prevent aberrant cell lysis and to allow final separation of viable daughter cells. In a multidisciplinary work, we disclose the molecular dialogue between the cell-wall hydrolase LytB, wall teichoic acids, and the eukaryotic-like protein kinase StkP in Streptococcus pneumoniae. After characterizing the peptidoglycan recognition mode by the catalytic domain of LytB, we further demonstrate that LytB possesses a modular organization allowing the specific binding to wall teichoic acids and to the protein kinase StkP. Structural and cellular studies notably reveal that the temporal and spatial localization of LytB is governed by the interaction between specific modules of LytB and the final PASTA domain of StkP. Our data collectively provide a comprehensive understanding of how LytB performs final separation of daughter cells and highlights the regulatory role of eukaryotic-like kinases on lytic machineries in the last step of cell division in streptococci. PubMed: 37418323DOI: 10.1016/j.celrep.2023.112756 PDB entries with the same primary citation |
| Experimental method | X-RAY DIFFRACTION (1.3 Å) |
Structure validation
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