7P7R

PoxtA-EQ2 antibiotic resistance ABCF bound to E. faecalis 70S ribosome, state I

This is a non-PDB format compatible entry.

Summary for 7P7R

• Entry DOI: 10.2210/pdb7p7r/pdb
• EMDB information: 13242
• Descriptor: ARE-ABC-F family resistance factor PoxtA, 23S rRNA, 5S rRNA, ... (59 entities in total)
• Functional Keywords: ribosome, enterococcus faecalis, poxta, abcf, antibiotic resistance protein
• Biological source: Enterococcus faecalis V583; More
• Total number of polymer chains: 53
• Total formula weight: 2243518.76

Authors

Crowe-McAuliffe, C.,Wilson, D.N. (deposition date: 2021-07-20, release date: 2022-03-23, Last modification date: 2024-07-17)

Primary citation

Crowe-McAuliffe, C.,Murina, V.,Turnbull, K.J.,Huch, S.,Kasari, M.,Takada, H.,Nersisyan, L.,Sundsfjord, A.,Hegstad, K.,Atkinson, G.C.,Pelechano, V.,Wilson, D.N.,Hauryliuk, V.
Structural basis for PoxtA-mediated resistance to phenicol and oxazolidinone antibiotics.
Nat Commun, 13:1860-1860, 2022

PubMed Abstract: PoxtA and OptrA are ATP binding cassette (ABC) proteins of the F subtype (ABCF). They confer resistance to oxazolidinone and phenicol antibiotics, such as linezolid and chloramphenicol, which stall translating ribosomes when certain amino acids are present at a defined position in the nascent polypeptide chain. These proteins are often encoded on mobile genetic elements, facilitating their rapid spread amongst Gram-positive bacteria, and are thought to confer resistance by binding to the ribosome and dislodging the bound antibiotic. However, the mechanistic basis of this resistance remains unclear. Here we refine the PoxtA spectrum of action, demonstrate alleviation of linezolid-induced context-dependent translational stalling, and present cryo-electron microscopy structures of PoxtA in complex with the Enterococcus faecalis 70S ribosome. PoxtA perturbs the CCA-end of the P-site tRNA, causing it to shift by ∼4 Å out of the ribosome, corresponding to a register shift of approximately one amino acid for an attached nascent polypeptide chain. We postulate that the perturbation of the P-site tRNA by PoxtA thereby alters the conformation of the attached nascent chain to disrupt the drug binding site.

PubMed: 35387982
DOI: 10.1038/s41467-022-29274-9

Experimental method

ELECTRON MICROSCOPY (2.9 Å)