7N4W

Complex structure of ROTU4 with rotundine

7N4W の概要

• エントリーDOI: 10.2210/pdb7n4w/pdb
• 関連するPDBエントリー: 7N4Z 7N53 7N54
• 分子名称: ROTU4, SULFATE ION, GLYCEROL, ... (5 entities in total)
• 機能のキーワード: transcription factor, protein engineering, specificity, synthetic biology, transcription
• 由来する生物種: Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S
• タンパク質・核酸の鎖数: 1
• 化学式量合計: 22688.97

構造登録者

Kim, W.,Zhang, Y. (登録日: 2021-06-04, 公開日: 2022-06-29, 最終更新日: 2023-10-18)

主引用文献

d'Oelsnitz, S.,Kim, W.,Burkholder, N.T.,Javanmardi, K.,Thyer, R.,Zhang, Y.,Alper, H.S.,Ellington, A.D.
Using fungible biosensors to evolve improved alkaloid biosyntheses.
Nat.Chem.Biol., 18:981-989, 2022

PubMed Abstract: A key bottleneck in the microbial production of therapeutic plant metabolites is identifying enzymes that can improve yield. The facile identification of genetically encoded biosensors can overcome this limitation and become part of a general method for engineering scaled production. We have developed a combined screening and selection approach that quickly refines the affinities and specificities of generalist transcription factors; using RamR as a starting point, we evolve highly specific (>100-fold preference) and sensitive (half-maximum effective concentration (EC) < 30 μM) biosensors for the alkaloids tetrahydropapaverine, papaverine, glaucine, rotundine and noscapine. High-resolution structures reveal multiple evolutionary avenues for the malleable effector-binding site and the creation of new pockets for different chemical moieties. These sensors further enabled the evolution of a streamlined pathway for tetrahydropapaverine, a precursor to four modern pharmaceuticals, collapsing multiple methylation steps into a single evolved enzyme. Our methods for evolving biosensors enable the rapid engineering of pathways for therapeutic alkaloids.

PubMed: 35799063
DOI: 10.1038/s41589-022-01072-w

実験手法

X-RAY DIFFRACTION (1.64 Å)