7MLI

Crystal structure of Thermus thermophilus reiterative transcription complex with 5nt oligo-C RNA

7MLI の概要

• エントリーDOI: 10.2210/pdb7mli/pdb
• 関連するPDBエントリー: 7MLB
• 分子名称: DNA-directed RNA polymerase subunit alpha, ZINC ION, DNA-directed RNA polymerase subunit beta, ... (10 entities in total)
• 機能のキーワード: thermus thermophilus, transcription initiation, transcription
• 由来する生物種: Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579); 詳細
• タンパク質・核酸の鎖数: 9
• 化学式量合計: 445179.68

構造登録者

Liu, Y.,Ebright, R.H. (登録日: 2021-04-28, 公開日: 2022-02-02, 最終更新日: 2023-10-18)

主引用文献

Liu, Y.,Yu, L.,Pukhrambam, C.,Winkelman, J.T.,Firlar, E.,Kaelber, J.T.,Zhang, Y.,Nickels, B.E.,Ebright, R.H.
Structural and mechanistic basis of reiterative transcription initiation.
Proc.Natl.Acad.Sci.USA, 119:-, 2022

PubMed Abstract: Reiterative transcription initiation, observed at promoters that contain homopolymeric sequences at the transcription start site, generates RNA products having 5' sequences noncomplementary to the DNA template. Here, using crystallography and cryoelectron microscopy to define structures, protein-DNA photocrosslinking to map positions of RNAP leading and trailing edges relative to DNA, and single-molecule DNA nanomanipulation to assess RNA polymerase (RNAP)-dependent DNA unwinding, we show that RNA extension in reiterative transcription initiation 1) occurs without DNA scrunching; 2) involves a short, 2- to 3-bp, RNA-DNA hybrid; and 3) generates RNA that exits RNAP through the portal by which scrunched nontemplate-strand DNA exits RNAP in standard transcription initiation. The results establish that, whereas RNA extension in standard transcription initiation proceeds through a scrunching mechanism, RNA extension in reiterative transcription initiation proceeds through a slippage mechanism, with slipping of RNA relative to DNA within a short RNA-DNA hybrid, and with extrusion of RNA from RNAP through an alternative RNA exit.

PubMed: 35082149
DOI: 10.1073/pnas.2115746119

実験手法

X-RAY DIFFRACTION (3.6 Å)