7MCK

Structure of CHK1 10-pt. mutant complex with LRRK2 inhibitor 18

Summary for 7MCK

• Entry DOI: 10.2210/pdb7mck/pdb
• Descriptor: Serine/threonine-protein kinase Chk1, N-{5-[(3S)-3-(2-hydroxypropan-2-yl)pyrrolidin-1-yl]-2-(trifluoromethyl)pyridin-3-yl}-6-(1-methyl-1H-pyrazol-4-yl)pyridine-2-carboxamide (3 entities in total)
• Functional Keywords: kinase, parkinsons disease, transferase-transferase inhibitor complex, transferase/transferase inhibitor
• Biological source: Homo sapiens (Human)
• Total number of polymer chains: 1
• Total formula weight: 34568.69

Authors

Palte, R. (deposition date: 2021-04-02, release date: 2021-06-16, Last modification date: 2023-10-18)

Primary citation

Gulati, A.,Yeung, C.S.,Lapointe, B.,Kattar, S.D.,Gunaydin, H.,Scott, J.D.,Childers, K.K.,Methot, J.L.,Simov, V.,Kurukulasuriya, R.,Pio, B.,Morriello, G.J.,Liu, P.,Tang, H.,Neelamkavil, S.,Wood, H.B.,Rada, V.L.,Ardolino, M.J.,Yan, X.C.,Palte, R.,Otte, K.,Faltus, R.,Woodhouse, J.,Hegde, L.G.,Ciaccio, P.,Minnihan, E.C.,DiMauro, E.F.,Fell, M.J.,Fuller, P.H.,Ellis, J.M.
Optimization of brain-penetrant picolinamide derived leucine-rich repeat kinase 2 (LRRK2) inhibitors.
Rsc Med Chem, 12:1164-1173, 2021

PubMed Abstract: The discovery of potent, kinome selective, brain penetrant LRRK2 inhibitors is the focus of extensive research seeking new, disease-modifying treatments for Parkinson's disease (PD). Herein, we describe the discovery and evolution of a picolinamide-derived lead series. Our initial optimization efforts aimed at improving the potency and CLK2 off-target selectivity of compound by modifying the heteroaryl C-H hinge and linker regions. This resulted in compound which advanced deep into our research operating plan (ROP) before heteroaryl aniline metabolite was characterized as Ames mutagenic, halting its progression. Strategic modifications to our ROP were made to enable early de-risking of putative aniline metabolites or hydrolysis products for mutagenicity in Ames. This led to the discovery of 3,5-diaminopyridine and 4,6-diaminopyrimidine as low risk for mutagenicity (defined by a 3-strain Ames negative result). Analysis of key matched molecular pairs and led to the prioritization of the 3,5-diaminopyridine sub-series for further optimization due to enhanced rodent brain penetration. These efforts culminated in the discovery of ethyl trifluoromethyl pyrazole with excellent LRRK2 potency and expanded selectivity off-target CLK2.

PubMed: 34355182
DOI: 10.1039/d1md00097g

Experimental method

X-RAY DIFFRACTION (1.65 Å)