7JZK

Crystal structure of LAIR1 ectodomain (from MGD21) in complex with Plasmodium RIFIN (PF3D7_0401300) V2 domain

7JZK の概要

• エントリーDOI: 10.2210/pdb7jzk/pdb
• 分子名称: LAIR1 ecotodomain from MGD21 antibody, Rifin, beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ... (4 entities in total)
• 機能のキーワード: lair1, insertion, antibody, rifin, malaria, plasmodium, immune system
• 由来する生物種: Homo sapiens; 詳細
• タンパク質・核酸の鎖数: 4
• 化学式量合計: 55744.30

構造登録者

Xu, K.,Kwong, P.D. (登録日: 2020-09-02, 公開日: 2021-05-26, 最終更新日: 2024-10-23)

主引用文献

Xu, K.,Wang, Y.,Shen, C.H.,Chen, Y.,Zhang, B.,Liu, K.,Tsybovsky, Y.,Wang, S.,Farney, S.K.,Gorman, J.,Stephens, T.,Verardi, R.,Yang, Y.,Zhou, T.,Chuang, G.Y.,Lanzavecchia, A.,Piccoli, L.,Kwong, P.D.
Structural basis of LAIR1 targeting by polymorphic Plasmodium RIFINs.
Nat Commun, 12:4226-4226, 2021

PubMed Abstract: RIFIN, a large family of Plasmodium variant surface antigens, plays a crucial role in malaria pathogenesis by mediating immune suppression through activation of inhibitory receptors such as LAIR1, and antibodies with LAIR1 inserts have been identified that bind infected erythrocytes through RIFIN. However, details of RIFIN-mediated LAIR1 recognition and receptor activation have been unclear. Here, we use negative-stain EM to define the architecture of LAIR1-inserted antibodies and determine crystal structures of RIFIN-variable 2 (V2) domain in complex with a LAIR1 domain. These structures reveal the LAIR1-binding region of RIFIN to be hydrophobic and membrane-distal, to exhibit extensive structural diversity, and to interact with RIFIN-V2 in a one-to-one fashion. Through structural and sequence analysis of various LAIR1 constructs, we identify essential elements of RIFIN-binding on LAIR1. Furthermore, a structure-derived LAIR1-binding sequence signature ascertained >20 LAIR1-binding RIFINs, including some from P. falciparum field strains and Plasmodium species infecting gorillas and chimpanzees.

PubMed: 34244481
DOI: 10.1038/s41467-021-24291-6

実験手法

X-RAY DIFFRACTION (2.457 Å)