7F70

Crystal structure of Rv3094c

7F70 の概要

• エントリーDOI: 10.2210/pdb7f70/pdb
• 分子名称: Rv3094c (2 entities in total)
• 機能のキーワード: sulfoxidation, ethionamide, mycobacterium tuberculosis, oxidoreductase
• 由来する生物種: Mycobacterium tuberculosis H37Rv
• タンパク質・核酸の鎖数: 1
• 化学式量合計: 40344.69

構造登録者

Wang, Z.X.,Ouyang, S.Y.,Zhang, H.T. (登録日: 2021-06-26, 公開日: 2022-06-29, 最終更新日: 2023-11-29)

主引用文献

Wan, L.,Hu, P.,Zhang, L.,Wang, Z.X.,Fleming, J.,Ni, B.,Luo, J.,Guan, C.X.,Bai, L.,Tan, Y.,Liu, H.,Li, N.,Xiao, T.,Bai, H.,Zhang, Y.A.,Zhang, X.E.,Wan, K.,Bi, L.,Ouyang, S.,Zhang, H.
Omics analysis of Mycobacterium tuberculosis isolates uncovers Rv3094c, an ethionamide metabolism-associated gene.
Commun Biol, 6:156-156, 2023

PubMed Abstract: Global control of the tuberculosis epidemic is threatened by increasing prevalence of drug resistant M. tuberculosis isolates. Many genome-wide studies focus on SNP-associated drug resistance mechanisms, but drug resistance in 5-30% of M. tuberculosis isolates (varying with antibiotic) appears unrelated to reported SNPs, and alternative drug resistance mechanisms involving variation in gene/protein expression are not well-studied. Here, using an omics approach, we identify 388 genes with lineage-related differential expression and 68 candidate drug resistance-associated gene pairs/clusters in 11 M. tuberculosis isolates (variable lineage/drug resistance profiles). Structural, mutagenesis, biochemical and bioinformatic studies on Rv3094c from the Rv3093c-Rv3095 gene cluster, a gene cluster selected for further investigation as it contains a putative monooxygenase/repressor pair and is associated with ethionamide resistance, provide insights on its involvement in ethionamide sulfoxidation, the initial step in its activation. Analysis of the structure of Rv3094c and its complex with ethionamide and flavin mononucleotide, to the best of our knowledge the first structures of an enzyme involved in ethionamide activation, identify key residues in the flavin mononucleotide and ethionamide binding pockets of Rv3094c, and F221, a gate between flavin mononucleotide and ethionamide allowing their interaction to complete the sulfoxidation reaction. Our work broadens understanding of both lineage- and drug resistance-associated gene/protein expression perturbations and identifies another player in mycobacterial ethionamide metabolism.

PubMed: 36750726
DOI: 10.1038/s42003-023-04433-w

実験手法

X-RAY DIFFRACTION (2.14 Å)