7E9E
Crystal structure of a class I PreQ1 riboswitch aptamer (ab13-14) complexed with a cognate ligand-derived photoaffinity probe
Summary for 7E9E
Entry DOI | 10.2210/pdb7e9e/pdb |
Descriptor | 33-mer RNA, 2-azanyl-5-[[2-(3-but-3-ynyl-1,2-diazirin-3-yl)ethylamino]methyl]-1,7-dihydropyrrolo[2,3-d]pyrimidin-4-one, SULFATE ION, ... (5 entities in total) |
Functional Keywords | preq1 riboswitch, cognate ligand-derived photoaffinity probe, rna |
Biological source | Caldanaerobacter subterraneus subsp. tengcongensis |
Total number of polymer chains | 1 |
Total formula weight | 10897.57 |
Authors | Numata, T.,Schneekloth, J.S. (deposition date: 2021-03-04, release date: 2021-11-17, Last modification date: 2023-11-29) |
Primary citation | Balaratnam, S.,Rhodes, C.,Bume, D.D.,Connelly, C.,Lai, C.C.,Kelley, J.A.,Yazdani, K.,Homan, P.J.,Incarnato, D.,Numata, T.,Schneekloth Jr., J.S. A chemical probe based on the PreQ 1 metabolite enables transcriptome-wide mapping of binding sites. Nat Commun, 12:5856-5856, 2021 Cited by PubMed: 34615874DOI: 10.1038/s41467-021-25973-x PDB entries with the same primary citation |
Experimental method | X-RAY DIFFRACTION (1.57 Å) |
Structure validation
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