7DTP

Crystal structure of agmatine coumaroyltransferase from Triticum aestivum

7DTP の概要

• エントリーDOI: 10.2210/pdb7dtp/pdb
• 分子名称: agmatine coumaroyltransferase (2 entities in total)
• 機能のキーワード: n-acyltransferase, transferase
• 由来する生物種: Triticum aestivum (Wheat)
• タンパク質・核酸の鎖数: 1
• 化学式量合計: 51876.64

構造登録者

Yamane, M.,Takenoya, M.,Sue, M.,Yajima, S. (登録日: 2021-01-06, 公開日: 2021-11-17, 最終更新日: 2024-11-13)

主引用文献

Yamane, M.,Takenoya, M.,Yajima, S.,Sue, M.
Molecular and structural characterization of agmatine coumaroyltransferase in Triticeae, the key regulator of hydroxycinnamic acid amide accumulation.
Phytochemistry, 189:112825-112825, 2021

PubMed Abstract: Hydroxycinnamic acid amides (HCAAs) are involved in stress-induced defense in many plant species. Barley accumulates high concentrations of HCAAs irrespective of exogenous stressors, while other major cereals such as wheat and rice accumulate relatively low levels of HCAAs in intact tissues. The primary HCAA species in barley are biosynthesized by agmatine p-coumaroyltransferase (ACT), an N-acyltransferase of the BAHD superfamily. However, the molecular basis underlying barley's uniquely high HCAA accumulation has not been elucidated, and information regarding the structural details of BAHD N-acyltransferases is limited. Hence, we aimed to investigate the ACTs of family Poaceae. We isolated ACT (-like) genes, including those previously undescribed, and investigated their enzymatic and genetic features. All the identified enzymes belonged to clade IVa of the BAHD superfamily. The barley and wheat ACTs were further categorized, based on catalytic properties and primary structures, into ACT1 and ACT2 groups, the encoding loci of which are neighbors on the same chromosome. While all ACTs exhibited similar K values for CoA-thioesters (acyl-group donors), members of the ACT1 group showed a distinctly higher affinity for agmatine (acyl-acceptor). Among the ACTs tested, an ACT isozyme in barley (HvACT1-1) showed the highest catalytic efficiency and transcript level, indicating that ACT regulates high-level HCAA accumulation in barley. For further enzymatic characterization of the ACTs, we crystalized wheat ACT2 (TaACT2) and determined its structure at 2.3 Å resolution. Structural alignment of TaACT2 and HvACT1-1 showed that the architectures of the substrate binding pockets were well conserved. However, the structure of a loop located at the entrance to acyl-acceptor binding site may be more flexible in TaACT2, which could be responsible for the lower affinity of TaACT2 to agmatine. Mutations of HvACT1-1 at Glu372 and Asp374 within one of the clade-IV specific motifs facing the deduced acyl-acceptor binding pocket caused significant catalytic deterioration toward agmatine both in K and k, suggesting their key roles in acyl acceptor binding by the clade-IV enzymes. This study elucidated the molecular basis of how plants accumulate defensive specialized metabolites and provided insights into developing efficient and eco-friendly agricultural methods.

PubMed: 34119689
DOI: 10.1016/j.phytochem.2021.112825

実験手法

X-RAY DIFFRACTION (2.3 Å)