7DG4

The co-crystal structure of DYRK2 with a small molecule inhibitor 6

7DG4 の概要

• エントリーDOI: 10.2210/pdb7dg4/pdb
• 分子名称: Dual specificity tyrosine-phosphorylation-regulated kinase 2, 2,7-dimethoxy-9-(piperidin-4-ylmethylsulfanyl)acridine (3 entities in total)
• 機能のキーワード: kinase, inhibitor, cell cycle
• 由来する生物種: Homo sapiens (Human)
• タンパク質・核酸の鎖数: 1
• 化学式量合計: 38044.13

構造登録者

Wei, T.,Xiao, J. (登録日: 2020-11-10, 公開日: 2021-11-10, 最終更新日: 2024-10-09)

主引用文献

Wei, T.,Wang, J.,Liang, R.,Chen, W.,Chen, Y.,Ma, M.,He, A.,Du, Y.,Zhou, W.,Zhang, Z.,Zeng, X.,Wang, C.,Lu, J.,Guo, X.,Chen, X.W.,Wang, Y.,Tian, R.,Xiao, J.,Lei, X.
Selective inhibition reveals the regulatory function of DYRK2 in protein synthesis and calcium entry.
Elife, 11:-, 2022

PubMed Abstract: The dual-specificity tyrosine phosphorylation-regulated kinase DYRK2 has emerged as a critical regulator of cellular processes. We took a chemical biology approach to gain further insights into its function. We developed C17, a potent small-molecule DYRK2 inhibitor, through multiple rounds of structure-based optimization guided by several co-crystallized structures. C17 displayed an effect on DYRK2 at a single-digit nanomolar IC and showed outstanding selectivity for the human kinome containing 467 other human kinases. Using C17 as a chemical probe, we further performed quantitative phosphoproteomic assays and identified several novel DYRK2 targets, including eukaryotic translation initiation factor 4E-binding protein 1 (4E-BP1) and stromal interaction molecule 1 (STIM1). DYRK2 phosphorylated 4E-BP1 at multiple sites, and the combined treatment of C17 with AKT and MEK inhibitors showed synergistic 4E-BP1 phosphorylation suppression. The phosphorylation of STIM1 by DYRK2 substantially increased the interaction of STIM1 with the ORAI1 channel, and C17 impeded the store-operated calcium entry process. These studies collectively further expand our understanding of DYRK2 and provide a valuable tool to pinpoint its biological function.

PubMed: 35439114
DOI: 10.7554/eLife.77696

実験手法

X-RAY DIFFRACTION (2.58 Å)