7BT7

F-actin-ADP complex structure

7BT7 の概要

• エントリーDOI: 10.2210/pdb7bt7/pdb
• 関連するPDBエントリー: 6M5G
• EMDBエントリー: 30085 30171
• 分子名称: Actin, alpha skeletal muscle, MAGNESIUM ION, ADENOSINE-5'-DIPHOSPHATE (3 entities in total)
• 機能のキーワード: f-actin, adp-f-actin, contractile protein
• 由来する生物種: Gallus gallus (Chicken)
• タンパク質・核酸の鎖数: 5
• 化学式量合計: 212742.30

構造登録者

Kumari, A.,Ragunath, V.K.,Sirajuddin, M. (登録日: 2020-03-31, 公開日: 2020-05-20, 最終更新日: 2024-03-27)

主引用文献

Kumari, A.,Kesarwani, S.,Javoor, M.G.,Vinothkumar, K.R.,Sirajuddin, M.
Structural insights into actin filament recognition by commonly used cellular actin markers.
Embo J., 39:e104006-e104006, 2020

PubMed Abstract: Cellular studies of filamentous actin (F-actin) processes commonly utilize fluorescent versions of toxins, peptides, and proteins that bind actin. While the choice of these markers has been largely based on availability and ease, there is a severe dearth of structural data for an informed judgment in employing suitable F-actin markers for a particular requirement. Here, we describe the electron cryomicroscopy structures of phalloidin, lifeAct, and utrophin bound to F-actin, providing a comprehensive high-resolution structural comparison of widely used actin markers and their influence towards F-actin. Our results show that phalloidin binding does not induce specific conformational change and lifeAct specifically recognizes closed D-loop conformation, i.e., ADP-Pi or ADP states of F-actin. The structural models aided designing of minimal utrophin and a shorter lifeAct, which can be utilized as F-actin marker. Together, our study provides a structural perspective, where the binding sites of utrophin and lifeAct overlap with majority of actin-binding proteins and thus offering an invaluable resource for researchers in choosing appropriate actin markers and generating new marker variants.

PubMed: 32567727
DOI: 10.15252/embj.2019104006

実験手法

ELECTRON MICROSCOPY (3.8 Å)