6YYI

Crystal structure of beta-D-xylosidase from Dictyoglomus thermophilum bound to beta-D-xylopyranose

6YYI の概要

• エントリーDOI: 10.2210/pdb6yyi/pdb
• 分子名称: Beta-xylosidase, 1,2-ETHANEDIOL, CITRIC ACID, ... (7 entities in total)
• 機能のキーワード: carbohydrate substrate complex, hydrolase
• 由来する生物種: Dictyoglomus thermophilum H-6-12
• タンパク質・核酸の鎖数: 2
• 化学式量合計: 123738.12

構造登録者

Lafite, P.,Daniellou, R.,Bretagne, D. (登録日: 2020-05-05, 公開日: 2020-12-02, 最終更新日: 2024-01-24)

主引用文献

Bretagne, D.,Paris, A.,de Vaumas, R.,Lafite, P.,Daniellou, R.
Crystal structure of Dictyoglomus thermophilum beta-d-xylosidase DtXyl unravels the structural determinants for efficient notoginsenoside R1 hydrolysis.
Biochimie, 181:34-41, 2020

PubMed Abstract: Dictyoglomus thermophilum β-d-xylosidase DtXyl is attractive as a potential thermostable biocatalyst able to produce biologically active ginsenosides intermediates from β-(1,2)-D-xylosylated compounds, including Notoginsenoside-R1. DtXyl was expressed as an active N-terminal His-tagged protein, and its crystal structure was solved in presence or absence of d-xylose product. Modelling of notoginsenoside R1 in DtXyl active site led to the identification of several hydrophobic residues interacting in close contact to the substrate hydrophobic core. Unlike other residues involved in substrate binding, these residues are not conserved among GH39 xylosidase family, and their physico-chemical properties can be correlated to the efficient binding and subsequent hydrolysis of Notoginsenoside R1.

PubMed: 33242495
DOI: 10.1016/j.biochi.2020.11.017

実験手法

X-RAY DIFFRACTION (2.67 Å)