6W02

Crystal Structure of ADP ribose phosphatase of NSP3 from SARS CoV-2 in the complex with ADP ribose

6W02 の概要

• エントリーDOI: 10.2210/pdb6w02/pdb
• 関連するPDBエントリー: 6VXS
• 分子名称: Non-structural protein 3, ADENOSINE-5-DIPHOSPHORIBOSE, 1,2-ETHANEDIOL, ... (4 entities in total)
• 機能のキーワード: sars corona virus, macro domain, adp-ribose, structural genomics, center for structural genomics of infectious diseases, csgid, viral protein
• 由来する生物種: Severe acute respiratory syndrome coronavirus 2 (2019-nCoV)
• タンパク質・核酸の鎖数: 2
• 化学式量合計: 37732.24

構造登録者

Michalska, K.,Kim, Y.,Jedrzejczak, R.,Maltseva, N.,Endres, M.,Mesecar, A.,Joachimiak, A.,Center for Structural Genomics of Infectious Diseases (CSGID) (登録日: 2020-02-28, 公開日: 2020-03-11, 最終更新日: 2023-10-11)

主引用文献

Michalska, K.,Kim, Y.,Jedrzejczak, R.,Maltseva, N.I.,Stols, L.,Endres, M.,Joachimiak, A.
Crystal structures of SARS-CoV-2 ADP-ribose phosphatase: from the apo form to ligand complexes.
Iucrj, 7:814-824, 2020

PubMed Abstract: Among 15 nonstructural proteins (Nsps), the newly emerging Severe Acute Respiratory Syndrome coronavirus 2 (SARS-CoV-2) encodes a large, multidomain Nsp3. One of its units is the ADP-ribose phosphatase domain (ADRP; also known as the macrodomain, MacroD), which is believed to interfere with the host immune response. Such a function appears to be linked to the ability of the protein to remove ADP-ribose from ADP-ribosylated proteins and RNA, yet the precise role and molecular targets of the enzyme remain unknown. Here, five high-resolution (1.07-2.01 Å) crystal structures corresponding to the apo form of the protein and its complexes with 2-(-morpholino)ethanesulfonic acid (MES), AMP and ADP-ribose have been determined. The protein is shown to undergo conformational changes to adapt to the ligand in the manner previously observed in close homologues from other viruses. A conserved water molecule is also identified that may participate in hydrolysis. This work builds foundations for future structure-based research on ADRP, including the search for potential antiviral therapeutics.

PubMed: 32939273
DOI: 10.1107/S2052252520009653

実験手法

X-RAY DIFFRACTION (1.5 Å)