6V1W

NMR Structure of C-terminal Domain of phi29 ATPase

6V1W の概要

• エントリーDOI: 10.2210/pdb6v1w/pdb
• NMR情報: BMRB: 30691
• 分子名称: DNA packaging protein (1 entity in total)
• 機能のキーワード: viral packaging motor, terminase, rnase h fold, viral protein
• 由来する生物種: Bacillus phage phi29
• タンパク質・核酸の鎖数: 1
• 化学式量合計: 14195.17

構造登録者

Mahler, B.,Mao, H.,Morais, M.C. (登録日: 2019-11-21, 公開日: 2020-09-30, 最終更新日: 2024-05-15)

主引用文献

Mahler, B.P.,Bujalowski, P.J.,Mao, H.,Dill, E.A.,Jardine, P.J.,Choi, K.H.,Morais, M.C.
NMR structure of a vestigial nuclease provides insight into the evolution of functional transitions in viral dsDNA packaging motors.
Nucleic Acids Res., 48:11737-11749, 2020

PubMed Abstract: Double-stranded DNA viruses use ATP-powered molecular motors to package their genomic DNA. To ensure efficient genome encapsidation, these motors regulate functional transitions between initiation, translocation, and termination modes. Here, we report structural and biophysical analyses of the C-terminal domain of the bacteriophage phi29 ATPase (CTD) that suggest a structural basis for these functional transitions. Sedimentation experiments show that the inter-domain linker in the full-length protein promotes oligomerization and thus may play a role in assembly of the functional motor. The NMR solution structure of the CTD indicates it is a vestigial nuclease domain that likely evolved from conserved nuclease domains in phage terminases. Despite the loss of nuclease activity, fluorescence binding assays confirm the CTD retains its DNA binding capabilities and fitting the CTD into cryoEM density of the phi29 motor shows that the CTD directly binds DNA. However, the interacting residues differ from those identified by NMR titration in solution, suggesting that packaging motors undergo conformational changes to transition between initiation, translocation, and termination. Taken together, these results provide insight into the evolution of functional transitions in viral dsDNA packaging motors.

PubMed: 33089330
DOI: 10.1093/nar/gkaa874

実験手法

SOLUTION NMR