6SJY

Diaminobutyrate acetyltransferase EctA from Paenibacillus lautus in complex with its product ADABA

Summary for 6SJY

• Entry DOI: 10.2210/pdb6sjy/pdb
• Descriptor: L-2,4-diaminobutyric acid acetyltransferase, GLYCEROL, (2~{S})-4-acetamido-2-azanyl-butanoic acid, ... (5 entities in total)
• Functional Keywords: l-2, 4-diaminobutyrate acetyltransferase, acetyl coenzyme a, acetylation, stress response, chemical chaperone, transferase
• Biological source: Geobacillus sp. (strain Y412MC10)
• Total number of polymer chains: 3
• Total formula weight: 61694.45

Authors

Richter, A.A.,Kobus, S.,Czech, L.,Hoeppner, A.,Bremer, E.,Smits, S.H.J. (deposition date: 2019-08-14, release date: 2020-01-29, Last modification date: 2024-01-24)

Primary citation

Richter, A.A.,Kobus, S.,Czech, L.,Hoeppner, A.,Zarzycki, J.,Erb, T.J.,Lauterbach, L.,Dickschat, J.S.,Bremer, E.,Smits, S.H.J.
The architecture of the diaminobutyrate acetyltransferase active site provides mechanistic insight into the biosynthesis of the chemical chaperone ectoine.
J.Biol.Chem., 295:2822-2838, 2020

PubMed Abstract: Ectoine is a solute compatible with the physiologies of both prokaryotic and eukaryotic cells and is widely synthesized by bacteria as an osmotic stress protectant. Because it preserves functional attributes of proteins and macromolecular complexes, it is considered a chemical chaperone and has found numerous practical applications. However, the mechanism of its biosynthesis is incompletely understood. The second step in ectoine biosynthesis is catalyzed by l-2,4-diaminobutyrate acetyltransferase (EctA; EC 2.3.1.178), which transfers the acetyl group from acetyl-CoA to EctB-formed l-2,4-diaminobutyrate (DAB), yielding -γ-acetyl-l-2,4-diaminobutyrate (-γ-ADABA), the substrate of ectoine synthase (EctC). Here, we report the biochemical and structural characterization of the EctA enzyme from the thermotolerant bacterium (). We found that ()EctA forms a homodimer whose enzyme activity is highly regiospecific by producing -γ-ADABA but not the ectoine catabolic intermediate -α-acetyl-l-2,4-diaminobutyric acid. High-resolution crystal structures of ()EctA (at 1.2-2.2 Å resolution) (i) for its apo-form, (ii) in complex with CoA, (iii) in complex with DAB, (iv) in complex with both CoA and DAB, and (v) in the presence of the product -γ-ADABA were obtained. To pinpoint residues involved in DAB binding, we probed the structure-function relationship of ()EctA by site-directed mutagenesis. Phylogenomics shows that EctA-type proteins from both Bacteria and Archaea are evolutionarily highly conserved, including catalytically important residues. Collectively, our biochemical and structural findings yielded detailed insights into the catalytic core of the EctA enzyme that laid the foundation for unraveling its reaction mechanism.

PubMed: 31969391
DOI: 10.1074/jbc.RA119.011277

Experimental method

X-RAY DIFFRACTION (2.2 Å)