6SHL

Structure of a marine algae virus of the order Picornavirales

Summary for 6SHL

• Entry DOI: 10.2210/pdb6shl/pdb
• EMDB information: 10200
• Descriptor: VP1, VP2, VP3, ... (4 entities in total)
• Functional Keywords: picornavirales, marnaviridae, icosahedral virus, algae virus, jelly roll, virus
• Biological source: Chaetoceros tenuissimus RNA virus type-II; More
• Total number of polymer chains: 4
• Total formula weight: 89567.76

Authors

Munke, A.,Tomaru, Y.,Kimura, K.,Okamoto, K. (deposition date: 2019-08-07, release date: 2020-02-12, Last modification date: 2024-05-22)

Primary citation

Munke, A.,Kimura, K.,Tomaru, Y.,Okamoto, K.
Capsid Structure of a Marine Algal Virus of the Order Picornavirales .
J.Virol., 94:-, 2020

PubMed Abstract: The order includes viruses that infect different kinds of eukaryotes and that share similar properties. The capsid proteins (CPs) of viruses in the order that infect unicellular organisms, such as algae, presumably possess certain characteristics that have changed little over the course of evolution, and thus these viruses may resemble the ancestor in some respects. Herein, we present the capsid structure of RNA virus type II (CtenRNAV-II) determined using cryo-electron microscopy at a resolution of 3.1 Å, the first alga virus belonging to the family of the order A structural comparison to related invertebrate and vertebrate viruses revealed a unique surface loop of the major CP VP1 that had not been observed previously, and further, revealed that another VP1 loop obscures the so-called canyon, which is a host-receptor binding site for many of the mammalian viruses. VP2 has an N-terminal tail, which has previously been reported as a primordial feature of viruses. The above-mentioned and other critical structural features provide new insights on three long-standing theories about : (i) the canyon hypothesis, (ii) the primordial VP2 domain swap, and (iii) the hypothesis that alga viruses could share characteristics with the ancestor. Identifying the acquired structural traits in virus capsids is important for elucidating what functions are essential among viruses that infect different hosts. The viruses infect a broad spectrum of hosts, ranging from unicellular algae to insects and mammals and include many human pathogens. Those viruses that infect unicellular protists, such as algae, are likely to have undergone fewer structural changes during the course of evolution compared to those viruses that infect multicellular eukaryotes and thus still share some characteristics with the ancestor. This article describes the first atomic capsid structure of an alga , CtenRNAV-II. A comparison to capsid structures of the related invertebrate and vertebrate viruses identified a number of structural traits that have been functionally acquired or lost during the course of evolution. These observations provide new insights on past theories on the viability and evolution of viruses.

PubMed: 32024776
DOI: 10.1128/JVI.01855-19

Experimental method

ELECTRON MICROSCOPY (3.1 Å)