6PVG

Crystal structure of ligand free PhqK

6PVG の概要

• エントリーDOI: 10.2210/pdb6pvg/pdb
• 分子名称: FAD monooxygenase, FLAVIN-ADENINE DINUCLEOTIDE (3 entities in total)
• 機能のキーワード: monooxygenase, flavin, biosynthetic protein
• 由来する生物種: Penicillium fellutanum
• タンパク質・核酸の鎖数: 1
• 化学式量合計: 52130.60

構造登録者

Fraley, A.E.,Smith, J.L.,Sherman, D.H. (登録日: 2019-07-20, 公開日: 2020-01-22, 最終更新日: 2024-03-13)

主引用文献

Fraley, A.E.,Caddell Haatveit, K.,Ye, Y.,Kelly, S.P.,Newmister, S.A.,Yu, F.,Williams, R.M.,Smith, J.L.,Houk, K.N.,Sherman, D.H.
Molecular Basis for Spirocycle Formation in the Paraherquamide Biosynthetic Pathway.
J.Am.Chem.Soc., 142:2244-2252, 2020

PubMed Abstract: The paraherquamides are potent anthelmintic natural products with complex heptacyclic scaffolds. One key feature of these molecules is the spiro-oxindole moiety that lends a strained three-dimensional architecture to these structures. The flavin monooxygenase PhqK was found to catalyze spirocycle formation through two parallel pathways in the biosynthesis of paraherquamides A and G. Two new paraherquamides (K and L) were isolated from a Δ strain of , and subsequent enzymatic reactions with these compounds generated two additional metabolites, paraherquamides M and N. Crystal structures of PhqK in complex with various substrates provided a foundation for mechanistic analyses and computational studies. While it is evident that PhqK can react with various substrates, reaction kinetics and molecular dynamics simulations indicated that the dioxepin-containing paraherquamide L is the favored substrate. Through this effort, we have elucidated a key step in the biosynthesis of the paraherquamides and provided a rationale for the selective spirocyclization of these powerful anthelmintic agents.

PubMed: 31904957
DOI: 10.1021/jacs.9b09070

実験手法

X-RAY DIFFRACTION (1.709 Å)