6PG0

Protein Tyrosine Phosphatase 1B (1-301), P188A mutant, vanadate bound state

6PG0 の概要

• エントリーDOI: 10.2210/pdb6pg0/pdb
• 分子名称: Tyrosine-protein phosphatase non-receptor type 1, VANADATE ION, GLYCEROL, ... (4 entities in total)
• 機能のキーワード: ptp1b, ptp, multiconformer, signaling protein, hydrolase
• 由来する生物種: Homo sapiens (Human)
• タンパク質・核酸の鎖数: 1
• 化学式量合計: 35069.50

構造登録者

Cui, D.S.,Lipchock, J.M.,Loria, J.P. (登録日: 2019-06-23, 公開日: 2019-08-07, 最終更新日: 2023-10-11)

主引用文献

Cui, D.S.,Lipchock, J.M.,Brookner, D.,Loria, J.P.
Uncovering the Molecular Interactions in the Catalytic Loop That Modulate the Conformational Dynamics in Protein Tyrosine Phosphatase 1B.
J.Am.Chem.Soc., 141:12634-12647, 2019

PubMed Abstract: Active-site loops are integral to the function of numerous enzymes. They enable substrate and product binding and release, sequester reaction intermediates, and recruit catalytic groups. Here, we examine the catalytic loop in the enzyme protein tyrosine phosphatase 1B (PTP1B). PTP1B has a mobile so-called WPD loop (named for its three N-terminal residues) that initiates the dephosphorylation of phosphor-tyrosine substrates upon loop closure. We have combined X-ray crystallography, solution NMR, and pre-steady-state kinetics experiments on wild-type and five WPD loop mutants to identify the relationships between the loop structure, dynamics, and function. The motions of the WPD loop are modulated by the formation of weak molecular interactions, where perturbations of these interactions modulate the conformational equilibrium landscape. The point mutants in the WPD loop alter the loop equilibrium position from a predominantly open state (P185A) to 50:50 (F182A), 35:65 (P188A), and predominantly closed states (T177A and P188A). Surprisingly, there is no correlation between the observed catalytic rates in the loop mutants and changes to the WPD loop equilibrium position. Rather, we observe a strong correlation between the rate of dephosphorylation of the phosphocysteine enzyme intermediate and uniform millisecond motions, not only within the loop but also in the adjacent α-helical domain of PTP1B. Thus, the control of loop motion and thereby catalytic activity is dispersed and resides within not only the loop sequence but also the surrounding protein architecture. This has broad implications for the general mechanistic understanding of enzyme reactions and the role that flexible loops play in the catalytic cycle.

PubMed: 31339043
DOI: 10.1021/jacs.9b04470

実験手法

X-RAY DIFFRACTION (2.1 Å)