In situ structure of Rotavirus RNA-dependent RNA polymerase at duplex-open state

Summary for 6OGY

EMDB information20059 20060
DescriptorRNA-dependent RNA polymerase of rotavirus A, Inner capsid protein VP2, DNA/RNA (5'-D(*(GTG))-R(P*GP*C)-3'), ... (4 entities in total)
Functional Keywordsrna-dependent rna polymerase, capsid shell protein, transcription, in situ structure, rotavirus, transcriptional factors, reovirus, virus, viral protein-transferase-rna complex, viral protein/transferase/rna
Biological sourceRotavirus A
Total number of polymer chains13
Total molecular weight1162166.9
Ding, K.,Chang, T.,Shen, W.,Roy, P.,Zhou, Z.H. (deposition date: 2019-04-03, release date: 2019-05-22, Last modification date: 2019-05-29)
Primary citation
Ding, K.,Celma, C.C.,Zhang, X.,Chang, T.,Shen, W.,Atanasov, I.,Roy, P.,Zhou, Z.H.
In situ structures of rotavirus polymerase in action and mechanism of mRNA transcription and release.
Nat Commun, 10:2216-2216, 2019
PubMed: 31101900 (PDB entries with the same primary citation)
DOI: 10.1038/s41467-019-10236-7
MImport into Mendeley
Experimental method

Structure validation

ClashscoreRamachandran outliersSidechain outliersRNA backbone3 0.0% 0.0% 0.05MetricValuePercentile RanksWorseBetterPercentile relative to all structuresPercentile relative to all EM structures

More Asymmetric unit images

Molmil generated image of 6ogy
no rotation
Molmil generated image of 6ogy
rotated about x axis by 90°
Molmil generated image of 6ogy
rotated about y axis by 90°