6LKX

The structure of PRRSV helicase

Summary for 6LKX

• Entry DOI: 10.2210/pdb6lkx/pdb
• Descriptor: RNA-dependent RNA polymerase, ZINC ION, GLYCEROL, ... (5 entities in total)
• Functional Keywords: prrsv, helicase, nsp10, virus
• Biological source: Porcine reproductive and respiratory syndrome virus (PRRSV)
• Total number of polymer chains: 2
• Total formula weight: 112481.55

Authors

Shi, Y.J.,Tong, X.H.,Peng, G.Q. (deposition date: 2019-12-20, release date: 2020-05-27, Last modification date: 2021-06-09)

Primary citation

Shi, Y.,Tong, X.,Ye, G.,Xiu, R.,Li, L.,Sun, L.,Shi, J.,Li, M.,Song, Y.,Fan, C.,Shi, K.,Fu, Z.F.,Xiao, S.,Peng, G.
Structural Characterization of the Helicase nsp10 Encoded by Porcine Reproductive and Respiratory Syndrome Virus.
J.Virol., 94:-, 2020

PubMed Abstract: Currently, an effective therapeutic treatment for porcine reproductive and respiratory syndrome virus (PRRSV) remains elusive. PRRSV helicase nsp10 is an important component of the replication transcription complex that plays a crucial role in viral replication, making nsp10 an important target for drug development. Here, we report the first crystal structure of full-length nsp10 from the arterivirus PRRSV, which has multiple domains: an N-terminal zinc-binding domain (ZBD), a 1B domain, and helicase core domains 1A and 2A. Importantly, our structural analyses indicate that the conformation of the 1B domain from arterivirus nsp10 undergoes a dynamic transition. The polynucleotide substrate channel formed by domains 1A and 1B adopts an open state, which may create enough space to accommodate and bind double-stranded RNA (dsRNA) during unwinding. Moreover, we report a unique C-terminal domain structure that participates in stabilizing the overall helicase structure. Our biochemical experiments also showed that deletion of the 1B domain and C-terminal domain significantly reduced the helicase activity of nsp10, indicating that the four domains must cooperate to contribute to helicase function. In addition, our results indicate that nidoviruses contain a conserved helicase core domain and key amino acid sites affecting helicase function, which share a common mechanism of helicase translocation and unwinding activity. These findings will help to further our understanding of the mechanism of helicase function and provide new targets for the development of antiviral drugs. Porcine reproductive and respiratory syndrome virus (PRRSV) is a major respiratory disease agent in pigs that causes enormous economic losses to the global swine industry. PRRSV helicase nsp10 is a multifunctional protein with translocation and unwinding activities and plays a vital role in viral RNA synthesis. Here, we report the first structure of full-length nsp10 from the arterivirus PRRSV at 3.0-Å resolution. Our results show that the 1B domain of PRRSV nsp10 adopts a novel open state and has a unique C-terminal domain structure, which plays a crucial role in nsp10 helicase activity. Furthermore, mutagenesis and structural analysis revealed conservation of the helicase catalytic domain across the order (families and ). Importantly, our results will provide a structural basis for further understanding the function of helicases in the order .

PubMed: 32461315
DOI: 10.1128/JVI.02158-19

Experimental method

X-RAY DIFFRACTION (2.998 Å)