6LGE

Bombyx mori GH13 sucrose hydrolase complexed with acarbose

6LGE の概要

• エントリーDOI: 10.2210/pdb6lge/pdb
• 関連するBIRD辞書のPRD_ID: PRD_900022
• 分子名称: Sucrose hydrolase, 4,6-dideoxy-4-{[(1S,4R,5S,6S)-4,5,6-trihydroxy-3-(hydroxymethyl)cyclohex-2-en-1-yl]amino}-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-beta-D-glucopyranose, MAGNESIUM ION, ... (5 entities in total)
• 機能のキーワード: sucrose, glycoside hydrolase, gh13, inhibitor, hydrolase
• 由来する生物種: Bombyx mori (Silk moth)
• タンパク質・核酸の鎖数: 2
• 化学式量合計: 138946.99

構造登録者

Miyazaki, T. (登録日: 2019-12-05, 公開日: 2020-05-20, 最終更新日: 2023-11-22)

主引用文献

Miyazaki, T.,Park, E.Y.
Structure-function analysis of silkworm sucrose hydrolase uncovers the mechanism of substrate specificity in GH13 subfamily 17exo-alpha-glucosidases.
J.Biol.Chem., 295:8784-8797, 2020

PubMed Abstract: The domestic silkworm expresses two sucrose-hydrolyzing enzymes, BmSUH and BmSUC1, belonging to glycoside hydrolase family 13 subfamily 17 (GH13_17) and GH32, respectively. BmSUH has little activity on maltooligosaccharides, whereas other insect GH13_17 α-glucosidases are active on sucrose and maltooligosaccharides. Little is currently known about the structural mechanisms and substrate specificity of GH13_17 enzymes. In this study, we examined the crystal structures of BmSUH without ligands; in complexes with substrates, products, and inhibitors; and complexed with its covalent intermediate at 1.60-1.85 Å resolutions. These structures revealed that the conformations of amino acid residues around subsite -1 are notably different at each step of the hydrolytic reaction. Such changes have not been previously reported among GH13 enzymes, including - and -acting hydrolases, such as α-glucosidases and α-amylases. Amino acid residues at subsite +1 are not conserved in BmSUH and other GH13_17 α-glucosidases, but subsite -1 residues are absolutely conserved. Substitutions in three subsite +1 residues, Gln, Tyr, and Glu, decreased sucrose hydrolysis and increased maltase activity of BmSUH, indicating that these residues are key for determining its substrate specificity. These results provide detailed insights into structure-function relationships in GH13 enzymes and into the molecular evolution of insect GH13_17 α-glucosidases.

PubMed: 32381508
DOI: 10.1074/jbc.RA120.013595

実験手法

X-RAY DIFFRACTION (1.75 Å)