6L1O

Product bound BacF structure from Bacillus subtillis

Summary for 6L1O

• Entry DOI: 10.2210/pdb6l1o/pdb
• Descriptor: Aminotransferase, TYROSINE, 4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE, ... (5 entities in total)
• Functional Keywords: aminotransferase, plp dependent enzyme, transferase
• Biological source: Bacillus subtilis
• Total number of polymer chains: 2
• Total formula weight: 90181.96

Authors

Balasubramanian, G.,Deshmukh, A.A. (deposition date: 2019-09-29, release date: 2020-03-18, Last modification date: 2023-11-22)

Primary citation

Deshmukh, A.,Gopal, B.
Structural insights into the catalytic mechanism of Bacillus subtilis BacF.
Acta Crystallogr.,Sect.F, 76:145-151, 2020

PubMed Abstract: The nonribosomal biosynthesis of the dipeptide antibiotic bacilysin is achieved by the concerted action of multiple enzymes in the Bacillus subtilis bac operon. BacF (YwfG), encoded by the bacF gene, is a fold type I pyridoxal 5-phosphate (PLP)-dependent stereospecific transaminase. Activity assays with L-phenylalanine and 4-hydroxyphenylpyruvic acid (4HPP), a chemical analogue of tetrahydrohydroxyphenylpyruvic acid (HHPP), revealed stereospecific substrate preferences, a finding that was consistent with previous reports on the role of this enzyme in bacilysin synthesis. The crystal structure of this dimeric enzyme was determined in its apo form as well as in substrate-bound and product-bound conformations. Two ligand-bound structures were determined by soaking BacF crystals with substrates (L-phenylalanine and 4-hydroxyphenylpyruvate). These structures reveal multiple catalytic steps: the internal aldimine with PLP and two external aldimine conformations that show the rearrangement of the external aldimine to generate product (L-tyrosine). Together, these structural snapshots provide an insight into the catalytic mechanism of this transaminase.

PubMed: 32134000
DOI: 10.1107/S2053230X20001636

Experimental method

X-RAY DIFFRACTION (1.9 Å)