6JKD

Crystal structure of tetrameric PepTSo2 in I4 space group

Summary for 6JKD

DescriptorProton:oligopeptide symporter POT family (1 entity in total)
Functional Keywordspeptide transporter, lcp crystallization, membrane protein
Biological sourceShewanella oneidensis MR-1
Total number of polymer chains1
Total molecular weight57626.56
Authors
Nagamura, R.,Fukuda, M.,Ishitani, R.,Nureki, O. (deposition date: 2019-02-28, release date: 2019-05-15)
Primary citation
Nagamura, R.,Fukuda, M.,Kawamoto, A.,Matoba, K.,Dohmae, N.,Ishitani, R.,Takagi, J.,Nureki, O.
Structural basis for oligomerization of the prokaryotic peptide transporter PepTSo2.
Acta Crystallogr.,Sect.F, 75:348-358, 2019
PubMed: 31045564 (PDB entries with the same primary citation)
DOI: 10.1107/S2053230X19003546
MImport into Mendeley
Experimental method
X-RAY DIFFRACTION (3.9 Å)
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Structure validation

RfreeClashscoreRamachandran outliersSidechain outliersRSRZ outliers 0.29760 3.7% 0.2%MetricValuePercentile RanksWorseBetterPercentile relative to all X-ray structuresPercentile relative to X-ray structures of similar resolution

More Asymmetric unit images

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Molmil generated image of 6jkd
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More Biological unit images

Molmil generated image of 6jkd
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Molmil generated image of 6jkd
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Molmil generated image of 6jkd
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(*)In the case of coarse surface representation, the asymmetric unit is shown as red ribbon representation.
Coordinate files for Biological unit (6jkd.pdb1.gz [278.12 KB])