6I9F

Solution structure of As-p18 reveals that nematode fatty acid binding proteins exhibit unusual structural features

6I9F の概要

• エントリーDOI: 10.2210/pdb6i9f/pdb
• 関連するPDBエントリー: 6I8X
• NMR情報: BMRB: 18632
• 分子名称: Fatty acid-binding protein homolog, OLEIC ACID (2 entities in total)
• 機能のキーワード: fabp, complex, lipid binding protein
• 由来する生物種: Ascaris suum (Pig roundworm)
• タンパク質・核酸の鎖数: 1
• 化学式量合計: 18629.03

構造登録者

Ibanez Shimabukuro, M.,Rey Burusco, M.F.,Kennedy, M.W.,Corsico, B.,Smith, B.O. (登録日: 2018-11-23, 公開日: 2019-07-17, 最終更新日: 2024-06-19)

主引用文献

Ibanez-Shimabukuro, M.,Rey-Burusco, M.F.,Gabrielsen, M.,Franchini, G.R.,Riboldi-Tunnicliffe, A.,Roe, A.J.,Griffiths, K.,Cooper, A.,Corsico, B.,Kennedy, M.W.,Smith, B.O.
As-p18, an extracellular fatty acid binding protein of nematodes, exhibits unusual structural features.
Biosci.Rep., 2019

PubMed Abstract: Intracellular lipid-binding proteins (iLBPs) of the fatty acid-binding protein (FABP) family of animals transport, mainly fatty acids or retinoids, are confined to the cytosol and have highly similar 3D structures. In contrast, nematodes possess fatty acid-binding proteins (nemFABPs) that are secreted into the perivitelline fluid surrounding their developing embryos. We report structures of As-p18, a nemFABP of the large intestinal roundworm , with ligand bound, determined using X-ray crystallography and nuclear magnetic resonance spectroscopy. In common with other FABPs, As-p18 comprises a ten β-strand barrel capped by two short α-helices, with the carboxylate head group of oleate tethered in the interior of the protein. However, As-p18 exhibits two distinctive longer loops amongst β-strands not previously seen in a FABP. One of these is adjacent to the presumed ligand entry portal, so it may help to target the protein for efficient loading or unloading of ligand. The second, larger loop is at the opposite end of the molecule and has no equivalent in any iLBP structure yet determined. As-p18 preferentially binds a single 18-carbon fatty acid ligand in its central cavity but in an orientation that differs from iLBPs. The unusual structural features of nemFABPs may relate to resourcing of developing embryos of nematodes.

PubMed: 31273060
DOI: 10.1042/BSR20191292

実験手法

SOLUTION NMR