6HU6

Structure of ARF1 RNA

6HU6 の概要

• エントリーDOI: 10.2210/pdb6hu6/pdb
• 分子名称: RNA (19-MER), RNA (5'-R(*GP*AP*GP*UP*GP*CP*CP*AP*GP*A)-3'), RNA (5'-R(*CP*UP*GP*GP*UP*AP*CP*UP*C)-3'), ... (6 entities in total)
• 機能のキーワード: dsrbd, rna localization, smd, staufen, rna
• 由来する生物種: Homo sapiens; 詳細
• タンパク質・核酸の鎖数: 4
• 化学式量合計: 18267.13

構造登録者

Emmerich, C.,Lazzaretti, D.,Bandholz-Cajamarca, L.,Bono, F. (登録日: 2018-10-05, 公開日: 2018-11-21, 最終更新日: 2024-05-15)

主引用文献

Lazzaretti, D.,Bandholz-Cajamarca, L.,Emmerich, C.,Schaaf, K.,Basquin, C.,Irion, U.,Bono, F.
The crystal structure of Staufen1 in complex with a physiological RNA sheds light on substrate selectivity.
Life Sci Alliance, 1:e201800187-e201800187, 2018

PubMed Abstract: During mRNA localization, RNA-binding proteins interact with specific structured mRNA localization motifs. Although several such motifs have been identified, we have limited structural information on how these interact with RNA-binding proteins. Staufen proteins bind structured mRNA motifs through dsRNA-binding domains (dsRBD) and are involved in mRNA localization in and mammals. We solved the structure of two dsRBDs of human Staufen1 in complex with a physiological dsRNA sequence. We identified interactions between the dsRBDs and the RNA sugar-phosphate backbone and direct contacts of conserved Staufen residues to RNA bases. Mutating residues mediating nonspecific backbone interactions only affected Staufen function in when in vitro binding was severely reduced. Conversely, residues involved in base-directed interactions were required in vivo even when they minimally affected in vitro binding. Our work revealed that Staufen can read sequence features in the minor groove of dsRNA and suggests that these influence target selection in vivo.

PubMed: 30456389
DOI: 10.26508/lsa.201800187

実験手法

X-RAY DIFFRACTION (1.904 Å)