6H9Z

Molecular bases of histo-blood group antigen recognition by the most common human rotavirus

6H9Z の概要

• エントリーDOI: 10.2210/pdb6h9z/pdb
• 分子名称: Outer capsid protein VP4, 2,3-DIHYDROXY-1,4-DITHIOBUTANE, SULFATE ION, ... (4 entities in total)
• 機能のキーワード: histo-blood group antigen rotavirus, viral protein
• 由来する生物種: Rotavirus A
• タンパク質・核酸の鎖数: 2
• 化学式量合計: 37659.48

構造登録者

Ciges-Tomas, J.R.,Gozalbo-Rovira, R.,Vila-Vicent, S.,Buesa, J.,Santiso-Bellon, C.,Monedero, V.,Yebra, M.J.,Rodriguez-Diaz, J.,Marina, A. (登録日: 2018-08-06, 公開日: 2019-06-12, 最終更新日: 2024-01-17)

主引用文献

Gozalbo-Rovira, R.,Ciges-Tomas, J.R.,Vila-Vicent, S.,Buesa, J.,Santiso-Bellon, C.,Monedero, V.,Yebra, M.J.,Marina, A.,Rodriguez-Diaz, J.
Unraveling the role of the secretor antigen in human rotavirus attachment to histo-blood group antigens.
Plos Pathog., 15:e1007865-e1007865, 2019

PubMed Abstract: Rotavirus is the leading agent causing acute gastroenteritis in young children, with the P[8] genotype accounting for more than 80% of infections in humans. The molecular bases for binding of the VP8* domain from P[8] VP4 spike protein to its cellular receptor, the secretory H type-1 antigen (Fuc-α1,2-Gal-β1,3-GlcNAc; H1), and to its precursor lacto-N-biose (Gal-β1,3-GlcNAc; LNB) have been determined. The resolution of P[8] VP8* crystal structures in complex with H1 antigen and LNB and site-directed mutagenesis experiments revealed that both glycans bind to the P[8] VP8* protein through a binding pocket shared with other members of the P[II] genogroup (i.e.: P[4], P[6] and P[19]). Our results show that the L-fucose moiety from H1 only displays indirect contacts with P[8] VP8*. However, the induced conformational changes in the LNB moiety increase the ligand affinity by two-fold, as measured by surface plasmon resonance (SPR), providing a molecular explanation for the different susceptibility to rotavirus infection between secretor and non-secretor individuals. The unexpected interaction of P[8] VP8* with LNB, a building block of type-1 human milk oligosaccharides, resulted in inhibition of rotavirus infection, highlighting the role and possible application of this disaccharide as an antiviral. While key amino acids in the H1/LNB binding pocket were highly conserved in members of the P[II] genogroup, differences were found in ligand affinities among distinct P[8] genetic lineages. The variation in affinities were explained by subtle structural differences induced by amino acid changes in the vicinity of the binding pocket, providing a fine-tuning mechanism for glycan binding in P[8] rotavirus.

PubMed: 31226167
DOI: 10.1371/journal.ppat.1007865

実験手法

X-RAY DIFFRACTION (1.51 Å)