Solution NMR structure of the tetramethylrhodamine (TMR) aptamer 3 in complex with 5-TAMRA

Summary for 6GZK

DescriptorTMR3 (48-MER), 5-carboxy methylrhodamine (2 entities in total)
Functional Keywordsrna aptamer, rna-ligand complex, three-way junction, rna
Biological sourcesynthetic construct
Total number of polymer chains1
Total molecular weight15925.69
Duchardt-Ferner, E.,Ohlenschlager, O.,Kreutz, C.R.,Wohnert, J. (deposition date: 2018-07-04, release date: 2019-07-17)
Primary citation
Duchardt-Ferner, E.,Kreutz, C.R.,Ohlenschlager, O.,Wohnert, J.
Structure of an RNA aptamer binding to the fluorophore tetramethylrhodamine
To Be Published,
Experimental method
NMR Information

Structure validation

ClashscoreRNA backbone0 0.25MetricValuePercentile RanksWorseBetterPercentile relative to all structuresPercentile relative to all NMR structures