6GWK

The crystal structure of Hfq from Caulobacter crescentus

Summary for 6GWK

• Entry DOI: 10.2210/pdb6gwk/pdb
• Descriptor: RNA-binding protein Hfq (2 entities in total)
• Functional Keywords: hfq, caulobacter, srna, rna-protein interactions, natively unstructured protein, rna binding protein
• Biological source: Caulobacter vibrioides CB15
• Total number of polymer chains: 24
• Total formula weight: 222037.80

Authors

Santiago-Frangos, A.,Frohlich, K.S.,Jeliazkov, J.R.,Gray, J.R.,Luisi, B.F.,Woodson, S.A.,Hardwick, S.W. (deposition date: 2018-06-25, release date: 2019-05-22, Last modification date: 2024-01-17)

Primary citation

Santiago-Frangos, A.,Frohlich, K.S.,Jeliazkov, J.R.,Malecka, E.M.,Marino, G.,Gray, J.J.,Luisi, B.F.,Woodson, S.A.,Hardwick, S.W.
Caulobacter crescentusHfq structure reveals a conserved mechanism of RNA annealing regulation.
Proc.Natl.Acad.Sci.USA, 116:10978-10987, 2019

PubMed Abstract: We have solved the X-ray crystal structure of the RNA chaperone protein Hfq from the alpha-proteobacterium to 2.15-Å resolution, resolving the conserved core of the protein and the entire C-terminal domain (CTD). The structure reveals that the CTD of neighboring hexamers pack in crystal contacts, and that the acidic residues at the C-terminal tip of the protein interact with positive residues on the rim of Hfq, as has been recently proposed for a mechanism of modulating RNA binding. De novo computational models predict a similar docking of the acidic tip residues against the core of Hfq. We also show that Hfq has sRNA binding and RNA annealing activities and is capable of facilitating the annealing of certain sRNA:mRNA pairs in vivo. Finally, we describe how the Hfq CTD and its acidic tip residues provide a mechanism to modulate annealing activity and substrate specificity in various bacteria.

PubMed: 31076551
DOI: 10.1073/pnas.1814428116

Experimental method

X-RAY DIFFRACTION (2.15 Å)