6C8Z

Last common ancestor of ADP-dependent phosphofructokinases from Methanosarcinales

Summary for 6C8Z

• Entry DOI: 10.2210/pdb6c8z/pdb
• Descriptor: ADP-dependent phosphofructokinase, ADENOSINE-5'-DIPHOSPHATE, NICKEL (II) ION, ... (5 entities in total)
• Functional Keywords: ancestral protein reconstruction, adp-dependent sugar kinases family, glucokinase, phosphofructokinase, enzyme evolution, transferase
• Biological source: Methanosarcinales
• Total number of polymer chains: 1
• Total formula weight: 58396.31

Authors

Castro-Fernandez, V.,Gonzalez-Ordenes, F.,Munoz, S.,Fuentes, N.,Leonardo, D.,Fuentealba, M.,Herrera-Morande, A.,Maturana, P.,Villalobos, P.,Garratt, R. (deposition date: 2018-01-25, release date: 2018-02-07, Last modification date: 2023-10-04)

Primary citation

Gonzalez-Ordenes, F.,Cea, P.A.,Fuentes-Ugarte, N.,Munoz, S.M.,Zamora, R.A.,Leonardo, D.,Garratt, R.C.,Castro-Fernandez, V.,Guixe, V.
ADP-Dependent Kinases From the Archaeal OrderMethanosarcinalesAdapt to Salt by a Non-canonical Evolutionarily Conserved Strategy.
Front Microbiol, 9:1305-1305, 2018

PubMed Abstract: Halophilic organisms inhabit hypersaline environments where the extreme ionic conditions and osmotic pressure have driven the evolution of molecular adaptation mechanisms. Understanding such mechanisms is limited by the common difficulties encountered in cultivating such organisms. Within the , for example, only the and the order include readily cultivable halophilic species. Furthermore, only the former have been extensively studied in terms of their component proteins. Here, in order to redress this imbalance, we investigate the halophilic adaptation of glycolytic enzymes from the ADP-dependent phosphofructokinase/glucokinase family (ADP-PFK/GK) derived from organisms of the order Structural analysis of proteins from non-halophilic and halophilic shows an almost identical composition and distribution of amino acids on both the surface and within the core. However, these differ from those observed in or Proteins from display a remarkable increase in surface lysine content and have no reduction to the hydrophobic core, contrary to the features ubiquitously observed in and which are thought to be the main features responsible for their halophilic properties. Biochemical characterization of recombinant ADP-PFK/GK from (halophilic) and (non-halophilic) shows the activity of both these extant enzymes to be only moderately inhibited by salt. Nonetheless, its activity over time is notoriously stabilized by salt. Furthermore, glycine betaine has a protective effect against KCl inhibition and enhances the thermal stability of both enzymes. The resurrection of the last common ancestor of ADP-PFK/GK from shows that the ancestral enzyme displays an extremely high salt tolerance and thermal stability. Structure determination of the ancestral protein reveals unique traits such as an increase in the Lys and Glu content at the protein surface and yet no reduction to the volume of the hydrophobic core. Our results suggest that the halophilic character is an ancient trait in the evolution of this protein family and that proteins from have adapted to highly saline environments by a non-canonical strategy, different from that currently proposed for . These results open up new avenues for the search and development of novel salt tolerant biocatalysts.

PubMed: 29997580
DOI: 10.3389/fmicb.2018.01305

Experimental method

X-RAY DIFFRACTION (2.86 Å)