6ALH

CryoEM structure of E.coli RNA polymerase elongation complex

「5UPC」から置き換えられました

6ALH の概要

• エントリーDOI: 10.2210/pdb6alh/pdb
• EMDBエントリー: 8584 8585 8586
• 分子名称: DNA (5'-D(*GP*GP*GP*CP*TP*AP*AP*TP*GP*AP*CP*GP*GP*CP*GP*AP*AP*TP*AP*CP*CP*C)-3'), DNA (29-MER), RNA (5'-R(P*CP*GP*GP*AP*GP*AP*GP*GP*UP*A)-3'), ... (9 entities in total)
• 機能のキーワード: dna-dependent rna polymerase, transcription, transcription-dna-rna complex, transcription/dna/rna
• 由来する生物種: Escherichia coli (strain K12); 詳細
• タンパク質・核酸の鎖数: 8
• 化学式量合計: 392519.57

構造登録者

Kang, J.Y.,Darst, S.A. (登録日: 2017-08-07, 公開日: 2017-08-16, 最終更新日: 2024-03-13)

主引用文献

Kang, J.Y.,Olinares, P.D.,Chen, J.,Campbell, E.A.,Mustaev, A.,Chait, B.T.,Gottesman, M.E.,Darst, S.A.
Structural basis of transcription arrest by coliphage HK022 Nun in anEscherichia coliRNA polymerase elongation complex.
Elife, 6:-, 2017

PubMed Abstract: Coliphage HK022 Nun blocks superinfection by coliphage λ by stalling RNA polymerase (RNAP) translocation specifically on λ DNA. To provide a structural framework to understand how Nun blocks RNAP translocation, we determined structures of RNAP ternary elongation complexes (TECs) with and without Nun by single-particle cryo-electron microscopy. Nun fits tightly into the TEC by taking advantage of gaps between the RNAP and the nucleic acids. The C-terminal segment of Nun interacts with the RNAP β and β' subunits inside the RNAP active site cleft as well as with nearly every element of the nucleic acid scaffold, essentially crosslinking the RNAP and the nucleic acids to prevent translocation, a mechanism supported by the effects of Nun amino acid substitutions. The nature of Nun interactions inside the RNAP active site cleft suggests that RNAP clamp opening is required for Nun to establish its interactions, explaining why Nun acts on paused TECs.

PubMed: 28318486
DOI: 10.7554/eLife.25478

実験手法

ELECTRON MICROSCOPY (4.4 Å)