6A1R

Mandelate oxidase mutant-Y128F with the N5-phenylacetyl-FMN adduct

Summary for 6A1R

Descriptor4-hydroxymandelate oxidase, 1-deoxy-1-[7,8-dimethyl-2,4-dioxo-5-(phenylacetyl)-1,3,4,5-tetrahydrobenzo[g]pteridin-10(2H)-yl]-5-O-phosphono-D-ribitol, MAGNESIUM ION, ... (4 entities in total)
Functional Keywordsfmn-dependent oxidase, flavoprotein
Biological sourceAmycolatopsis orientalis (Nocardia orientalis)
Total number of polymer chains1
Total molecular weight40630.36
Authors
Li, T.L.,Lin, K.H. (deposition date: 2018-06-08, release date: 2019-06-19, Last modification date: 2019-10-16)
Primary citation
Lyu, S.Y.,Lin, K.H.,Yeh, H.W.,Li, Y.S.,Huang, C.M.,Wang, Y.L.,Shih, H.W.,Hsu, N.S.,Wu, C.J.,Li, T.L.
The flavin mononucleotide cofactor in alpha-hydroxyacid oxidases exerts its electrophilic/nucleophilic duality in control of the substrate-oxidation level.
Acta Crystallogr D Struct Biol, 75:918-929, 2019
PubMed: 31588923 (PDB entries with the same primary citation)
DOI: 10.1107/S2059798319011938
MImport into Mendeley
Experimental method
X-RAY DIFFRACTION (1.652 Å)
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Structure validation

RfreeClashscoreRamachandran outliersSidechain outliersRSRZ outliers 0.18540 1.2% 4.8%MetricValuePercentile RanksWorseBetterPercentile relative to all X-ray structuresPercentile relative to X-ray structures of similar resolution
Download full validation report