5ZZ1

Probing the active center of catalase-phenol oxidase from Scytalidium thermophilum

5ZZ1 の概要

• エントリーDOI: 10.2210/pdb5zz1/pdb
• 分子名称: Catalase, CIS-HEME D HYDROXYCHLORIN GAMMA-SPIROLACTONE, 3-AMINO-1,2,4-TRIAZOLE, ... (5 entities in total)
• 機能のキーワード: catalase-phenol oxidase, scytalidium thermophilum, oxidoreductase
• 由来する生物種: Mycothermus thermophilus
• タンパク質・核酸の鎖数: 4
• 化学式量合計: 320526.45

構造登録者

Yuzugullu Karakus, Y.,Trinh, C.H.,Pearson, A.R.,Ogel, Z.B.,McPherson, M.J. (登録日: 2018-05-29, 公開日: 2019-05-29, 最終更新日: 2023-11-22)

主引用文献

Yuzugullu Karakus, Y.,Goc, G.,Balci, S.,Yorke, B.A.,Trinh, C.H.,McPherson, M.J.,Pearson, A.R.
Identification of the site of oxidase substrate binding in Scytalidium thermophilum catalase.
Acta Crystallogr D Struct Biol, 74:979-985, 2018

PubMed Abstract: The catalase from Scytalidium thermophilum is a homotetramer containing a heme d in each active site. Although the enzyme has a classical monofunctional catalase fold, it also possesses oxidase activity towards a number of small organics, including catechol and phenol. In order to further investigate this, the crystal structure of the complex of the catalase with the classical catalase inhibitor 3-amino-1,2,4-triazole (3TR) was determined at 1.95 Å resolution. Surprisingly, no binding to the heme site was observed; instead, 3TR occupies a binding site corresponding to the NADPH-binding pocket in mammalian catalases at the entrance to a lateral channel leading to the heme. Kinetic analysis of site-directed mutants supports the assignment of this pocket as the binding site for oxidase substrates.

PubMed: 30289408
DOI: 10.1107/S2059798318010628

実験手法

X-RAY DIFFRACTION (1.91 Å)