5ZNT

Insect chitin deacetylase

Summary for 5ZNT

• Entry DOI: 10.2210/pdb5znt/pdb
• Descriptor: chitin deacetylase, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ZINC ION, ... (5 entities in total)
• Functional Keywords: chitin deacetylase, bombyx mori, activity, chitin binding, chitosan, hydrolase
• Biological source: Bombyx mori (Silk moth)
• Total number of polymer chains: 1
• Total formula weight: 45241.62

Authors

Liu, L.,Zhou, Y.,Yang, Q. (deposition date: 2018-04-10, release date: 2019-02-20, Last modification date: 2023-11-22)

Primary citation

Liu, L.,Zhou, Y.,Qu, M.,Qiu, Y.,Guo, X.,Zhang, Y.,Liu, T.,Yang, J.,Yang, Q.
Structural and biochemical insights into the catalytic mechanisms of two insect chitin deacetylases of the carbohydrate esterase 4 family.
J. Biol. Chem., 294:5774-5783, 2019

PubMed Abstract: Insect chitin deacetylases (CDAs) catalyze the removal of acetyl groups from chitin and modify this polymer during its synthesis and reorganization. CDAs are essential for insect survival and therefore represent promising targets for insecticide development. However, the structural and biochemical characteristics of insect CDAs have remained elusive. Here, we report the crystal structures of two insect CDAs from the silk moth : CDA1, which may function in cuticle modification, and CDA8, which may act in modifying peritrophic membranes in the midgut. Both enzymes belong to the carbohydrate esterase 4 (CE4) family. Comparing their overall structures at 1.98-2.4 Å resolution with those from well-studied microbial CDAs, we found that two unique loop regions in CDA1 and CDA8 contribute to the distinct architecture of their substrate-binding clefts. These comparisons revealed that both CDA1 and CDA8 possess a much longer and wider substrate-binding cleft with a very open active site in the center than the microbial CDAs, including CDA from and CE4A from species AW19M34-1. Biochemical analyses indicated that CDA8 is an active enzyme that requires its substrates to occupy subsites 0, +1, and +2 for catalysis. In contrast, CDA1 also required accessory proteins for catalysis. To the best of our knowledge, our work is the first to unveil the structural and biochemical features of insect proteins belonging to the CE4 family.

PubMed: 30755482
DOI: 10.1074/jbc.RA119.007597

Experimental method

X-RAY DIFFRACTION (1.979 Å)