5Z9X

Arabidopsis SMALL RNA DEGRADING NUCLEASE 1 in complex with an RNA substrate

Summary for 5Z9X

DescriptorSmall RNA degrading nuclease 1, RNA (5'-R(P*GP*CP*CP*CP*AP*UP*UP*AP*G)-3'), SULFATE ION, ... (5 entities in total)
Functional Keywordsexonuclease, microrna turnover, protein-rna complex, plant protein, plant protein-rna complex, plant protein/rna
Biological sourceArabidopsis thaliana (Mouse-ear cress)
More
Total number of polymer chains2
Total molecular weight49830.75
Authors
Chen, J.,Liu, L.,You, C.,Gu, J.,Ruan, W.,Zhang, L.,Gan, J.,Cao, C.,Huang, Y.,Chen, X.,Ma, J. (deposition date: 2018-02-05, release date: 2018-06-27, Last modification date: 2018-10-03)
Primary citation
Chen, J.,Liu, L.,You, C.,Gu, J.,Ruan, W.,Zhang, L.,Gan, J.,Cao, C.,Huang, Y.,Chen, X.,Ma, J.
Structural and biochemical insights into small RNA 3' end trimming by Arabidopsis SDN1.
Nat Commun, 9:3585-3585, 2018
PubMed: 30181559 (PDB entries with the same primary citation)
DOI: 10.1038/s41467-018-05942-7
MImport into Mendeley
Experimental method
X-RAY DIFFRACTION (2.8 Å)
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Structure validation

RfreeClashscoreRamachandran outliersSidechain outliersRSRZ outliersRNA backbone0.2652707.8%4.0%0.57MetricValuePercentile RanksWorseBetterPercentile relative to all X-ray structuresPercentile relative to X-ray structures of similar resolution