5YSB

Crystal structure of beta-1,2-glucooligosaccharide binding protein in ligand-free form

Summary for 5YSB

DescriptorLin1841 protein, ZINC ION, DI(HYDROXYETHYL)ETHER, ... (4 entities in total)
Functional Keywordssolute-binding protein, protein-carbohydrate complex, beta-1, 2-glucooligosaccharide, sophorooligosaccharide, alpha/beta domain, sugar binding protein
Biological sourceListeria innocua serovar 6a (strain ATCC BAA-680 / CLIP 11262)
Total number of polymer chains2
Total molecular weight90946.29
Authors
Abe, K.,Nakajima, M.,Taguchi, H.,Arakawa, T.,Fushinobu, S. (deposition date: 2017-11-13, release date: 2018-05-02, Last modification date: 2018-06-20)
Primary citation
Abe, K.,Sunagawa, N.,Terada, T.,Takahashi, Y.,Arakawa, T.,Igarashi, K.,Samejima, M.,Nakai, H.,Taguchi, H.,Nakajima, M.,Fushinobu, S.
Structural and thermodynamic insights into beta-1,2-glucooligosaccharide capture by a solute-binding protein inListeria innocua.
J. Biol. Chem., 293:8812-8828, 2018
PubMed: 29678880 (PDB entries with the same primary citation)
DOI: 10.1074/jbc.RA117.001536
MImport into Mendeley
Experimental method
X-RAY DIFFRACTION (2.2 Å)
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Structure validation

RfreeClashscoreRamachandran outliersSidechain outliersRSRZ outliers0.250300.5%3.4%MetricValuePercentile RanksWorseBetterPercentile relative to all X-ray structuresPercentile relative to X-ray structures of similar resolution