5YK4

Mismatch Repair Protein

5YK4 の概要

• エントリーDOI: 10.2210/pdb5yk4/pdb
• 関連するPDBエントリー: 5X9W
• 分子名称: DNA mismatch repair protein MutS, ADENOSINE-5'-DIPHOSPHATE (3 entities in total)
• 機能のキーワード: muts, mismatch sensor, atpase, dna binding protein
• 由来する生物種: Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090)
• タンパク質・核酸の鎖数: 2
• 化学式量合計: 181054.11

構造登録者

Nirwal, S.,Nair, D.T. (登録日: 2017-10-12, 公開日: 2017-11-22, 最終更新日: 2023-11-22)

主引用文献

Nirwal, S.,Kulkarni, D.S.,Sharma, A.,Rao, D.N.,Nair, D.T.
Mechanism of formation of a toroid around DNA by the mismatch sensor protein.
Nucleic Acids Res., 46:256-266, 2018

PubMed Abstract: The DNA mismatch repair (MMR) pathway removes errors that appear during genome replication. MutS is the primary mismatch sensor and forms an asymmetric dimer that encircles DNA to bend it to scan for mismatches. The mechanism utilized to load DNA into the central tunnel was unknown and the origin of the force required to bend DNA was unclear. We show that, in absence of DNA, MutS forms a symmetric dimer wherein a gap exists between the monomers through which DNA can enter the central tunnel. The comparison with structures of MutS-DNA complexes suggests that the mismatch scanning monomer (Bm) will move by nearly 50 Å to associate with the other monomer (Am). Consequently, the N-terminal domains of both monomers will press onto DNA to bend it. The proposed mechanism of toroid formation evinces that the force required to bend DNA arises primarily due to the movement of Bm and hence, the MutS dimer acts like a pair of pliers to bend DNA. We also shed light on the allosteric mechanism that influences the expulsion of adenosine triphosphate from Am on DNA binding. Overall, this study provides mechanistic insight regarding the primary event in MMR i.e. the assembly of the MutS-DNA complex.

PubMed: 29182773
DOI: 10.1093/nar/gkx1149

実験手法

X-RAY DIFFRACTION (2.97 Å)