5Y15

Crystal structure of human DUSP28

5Y15 の概要

• エントリーDOI: 10.2210/pdb5y15/pdb
• 分子名称: Dual specificity phosphatase 28, PHOSPHATE ION (3 entities in total)
• 機能のキーワード: dusp28, dual-specificity phosphatase, dusp, protein tyrosine phosphatase, ptp, hydrolase
• 由来する生物種: Homo sapiens (Human)
• タンパク質・核酸の鎖数: 2
• 化学式量合計: 41392.94

構造登録者

Ku, B.,Hong, W.,Kim, S.J.,Ryu, S.E. (登録日: 2017-07-19, 公開日: 2017-11-22, 最終更新日: 2023-11-22)

主引用文献

Ku, B.,Hong, W.,Keum, C.W.,Kim, M.,Ryu, H.,Jeon, D.,Shin, H.C.,Kim, J.H.,Kim, S.J.,Ryu, S.E.
Structural and biochemical analysis of atypically low dephosphorylating activity of human dual-specificity phosphatase 28
PLoS ONE, 12:e0187701-e0187701, 2017

PubMed Abstract: Dual-specificity phosphatases (DUSPs) constitute a subfamily of protein tyrosine phosphatases, and are intimately involved in the regulation of diverse parameters of cellular signaling and essential biological processes. DUSP28 is one of the DUSP subfamily members that is known to be implicated in the progression of hepatocellular and pancreatic cancers, and its biological functions and enzymatic characteristics are mostly unknown. Herein, we present the crystal structure of human DUSP28 determined to 2.1 Å resolution. DUSP28 adopts a typical DUSP fold, which is composed of a central β-sheet covered by α-helices on both sides and contains a well-ordered activation loop, as do other enzymatically active DUSP proteins. The catalytic pocket of DUSP28, however, appears hardly accessible to a substrate because of the presence of nonconserved bulky residues in the protein tyrosine phosphatase signature motif. Accordingly, DUSP28 showed an atypically low phosphatase activity in the biochemical assay, which was remarkably improved by mutations of two nonconserved residues in the activation loop. Overall, this work reports the structural and biochemical basis for understanding a putative oncological therapeutic target, DUSP28, and also provides a unique mechanism for the regulation of enzymatic activity in the DUSP subfamily proteins.

PubMed: 29121083
DOI: 10.1371/journal.pone.0187701

実験手法

X-RAY DIFFRACTION (2.1 Å)