5XXM

Crystal structure of GH3 beta-glucosidase from Bacteroides thetaiotaomicron in complex with gluconolactone

Summary for 5XXM

DescriptorPeriplasmic beta-glucosidase, MAGNESIUM ION, (3S,4R,5R,6S)-3,4,5-TRIHYDROXY-6-(HYDROXYMETHYL)TETRAHYDRO-2H-PYRAN-2-ONE, ... (5 entities in total)
Functional Keywordsglycoside hydrolase family 3, beta-glucosidase, hydrolase
Biological sourceBacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / NCTC 10582 / E50 / VPI-5482)
Total number of polymer chains2
Total molecular weight168636.19
Authors
Nakajima, M.,Ishiguro, R.,Tanaka, N.,Abe, K.,Maeda, T.,Miyanaga, A.,Takahash, Y.,Sugimoto, N.,Nakai, H.,Taguchi, H. (deposition date: 2017-07-04, release date: 2017-12-13, Last modification date: 2017-12-27)
Primary citation
Ishiguro, R.,Tanaka, N.,Abe, K.,Nakajima, M.,Maeda, T.,Miyanaga, A.,Takahashi, Y.,Sugimoto, N.,Nakai, H.,Taguchi, H.
Function and structure relationships of a beta-1,2-glucooligosaccharide-degrading beta-glucosidase.
FEBS Lett., 591:3926-3936, 2017
PubMed: 29131329 (PDB entries with the same primary citation)
DOI: 10.1002/1873-3468.12911
MImport into Mendeley
Experimental method
X-RAY DIFFRACTION (1.7 Å)
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Structure validation

RfreeClashscoreRamachandran outliersSidechain outliersRSRZ outliers0.21510.1%1.8%2.1%MetricValuePercentile RanksWorseBetterPercentile relative to all X-ray structuresPercentile relative to X-ray structures of similar resolution