5WX3

Alkyldiketide-CoA synthase from Evodia rutaecarpa

Summary for 5WX3

• Entry DOI: 10.2210/pdb5wx3/pdb
• Related: 5WX4 5WX5 5WX6 5WX7
• Descriptor: Alkyldiketide-CoA synthase, COENZYME A, SULFATE ION, ... (4 entities in total)
• Functional Keywords: polyketidesynthase, transferase
• Biological source: Tetradium ruticarpum
• Total number of polymer chains: 4
• Total formula weight: 180081.81

Authors

Matsui, T.,Kodama, T.,Tadakoshi, T.,Morita, H. (deposition date: 2017-01-06, release date: 2017-04-26, Last modification date: 2023-11-22)

Primary citation

Matsui, T.,Kodama, T.,Mori, T.,Tadakoshi, T.,Noguchi, H.,Abe, I.,Morita, H.
2-Alkylquinolone alkaloid biosynthesis in the medicinal plant Evodia rutaecarpa involves collaboration of two novel type III polyketide synthases
J. Biol. Chem., 292:9117-9135, 2017

PubMed Abstract: 2-Alkylquinolone (2AQ) alkaloids are pharmaceutically and biologically important natural products produced by both bacteria and plants, with a wide range of biological effects, including antibacterial, cytotoxic, anticholinesterase, and quorum-sensing signaling activities. These diverse activities and 2AQ occurrence in vastly different phyla have raised much interest in the biosynthesis pathways leading to their production. Previous studies in plants have suggested that type III polyketide synthases (PKSs) might be involved in 2AQ biosynthesis, but this hypothesis is untested. To this end, we cloned two novel type III PKSs, alkyldiketide-CoA synthase (ADS) and alkylquinolone synthase (AQS), from the 2AQ-producing medicinal plant, (Rutaceae). Functional analyses revealed that collaboration of ADS and AQS produces 2AQ via condensations of -methylanthraniloyl-CoA, a fatty acyl-CoA, with malonyl-CoA. We show that ADS efficiently catalyzes the decarboxylative condensation of malonyl-CoA with a fatty acyl-CoA to produce an alkyldiketide-CoA, whereas AQS specifically catalyzes the decarboxylative condensation of an alkyldiketide acid with -methylanthraniloyl-CoA to generate the 2AQ scaffold via C-C/C-N bond formations. Remarkably, the ADS and AQS crystal structures at 1.80 and 2.20 Å resolutions, respectively, indicated that the unique active-site architecture with Trp-332 and Cys-191 and the novel CoA-binding tunnel with Tyr-215 principally control the substrate and product specificities of ADS and AQS, respectively. These results provide additional insights into the catalytic versatility of the type III PKSs and their functional and evolutionary implications for 2AQ biosynthesis in plants and bacteria.

PubMed: 28411241
DOI: 10.1074/jbc.M117.778977

Experimental method

X-RAY DIFFRACTION (1.801 Å)