5UMW

Crystal structure of TnmS2, an antibiotic binding protein from Streptomyces sp. CB03234

5UMW の概要

• エントリーDOI: 10.2210/pdb5umw/pdb
• 分子名称: Glyoxalase/bleomycin resisance protein/dioxygenase, RIBOFLAVIN (3 entities in total)
• 機能のキーワード: glyoxalase/bleomycin resistance protein/dioxygenase superfamily, structural genomics, psi-biology, midwest center for structural genomics, mcsg, enzyme discovery for natural product biosynthesis, natpro, tiancimycin-binding protein
• 由来する生物種: Streptomyces sp. CB03234
• タンパク質・核酸の鎖数: 6
• 化学式量合計: 103920.36

構造登録者

Chang, C.Y.,Chang, C.,Nocek, B.,Rudolf, J.D.,Joachimiak, A.,Phillips Jr., G.N.,Shen, B.,Enzyme Discovery for Natural Product Biosynthesis (NatPro),Midwest Center for Structural Genomics (MCSG) (登録日: 2017-01-29, 公開日: 2018-07-04, 最終更新日: 2020-09-23)

主引用文献

Chang, C.Y.,Yan, X.,Crnovcic, I.,Annaval, T.,Chang, C.,Nocek, B.,Rudolf, J.D.,Yang, D.,Babnigg, G.,Joachimiak, A.,Phillips Jr., G.N.,Shen, B.
Resistance to Enediyne Antitumor Antibiotics by Sequestration.
Cell Chem Biol, 25:1075-1085.e4, 2018

PubMed Abstract: The enediynes, microbial natural products with extraordinary cytotoxicities, have been translated into clinical drugs. Two self-resistance mechanisms are known in the enediyne producers-apoproteins for the nine-membered enediynes and self-sacrifice proteins for the ten-membered enediyne calicheamicin. Here we show that: (1) tnmS1, tnmS2, and tnmS3 encode tiancimycin (TNM) resistance in its producer Streptomyces sp. CB03234, (2) tnmS1, tnmS2, and tnmS3 homologs are found in all anthraquinone-fused enediyne producers, (3) TnmS1, TnmS2, and TnmS3 share a similar β barrel-like structure, bind TNMs with nanomolar K values, and confer resistance by sequestration, and (4) TnmS1, TnmS2, and TnmS3 homologs are widespread in nature, including in the human microbiome. These findings unveil an unprecedented resistance mechanism for the enediynes. Mechanisms of self-resistance in producers serve as models to predict and combat future drug resistance in clinical settings. Enediyne-based chemotherapies should now consider the fact that the human microbiome harbors genes encoding enediyne resistance.

PubMed: 29937405
DOI: 10.1016/j.chembiol.2018.05.012

実験手法

X-RAY DIFFRACTION (2.27 Å)