5M5X

RNA Polymerase I elongation complex 1

Summary for 5M5X

• Entry DOI: 10.2210/pdb5m5x/pdb
• EMDB information: 3447
• Descriptor: DNA-directed RNA polymerase I subunit RPA190, DNA-directed RNA polymerases I, II, and III subunit RPABC5, DNA-directed RNA polymerases I and III subunit RPAC2, ... (18 entities in total)
• Functional Keywords: rna polymerase i, elongation, transcription
• Biological source: Saccharomyces cerevisiae (Baker's yeast); More
• Total number of polymer chains: 17
• Total formula weight: 620471.98

Authors

Tafur, L.,Sadian, Y.,Hoffmann, N.A.,Jakobi, A.J.,Wetzel, R.,Hagen, W.J.H.,Sachse, C.,Muller, C.W. (deposition date: 2016-10-23, release date: 2016-12-21, Last modification date: 2024-11-06)

Primary citation

Tafur, L.,Sadian, Y.,Hoffmann, N.A.,Jakobi, A.J.,Wetzel, R.,Hagen, W.J.,Sachse, C.,Muller, C.W.
Molecular Structures of Transcribing RNA Polymerase I.
Mol. Cell, 64:1135-1143, 2016

PubMed Abstract: RNA polymerase I (Pol I) is a 14-subunit enzyme that solely synthesizes pre-ribosomal RNA. Recently, the crystal structure of apo Pol I gave unprecedented insight into its molecular architecture. Here, we present three cryo-EM structures of elongating Pol I, two at 4.0 Å and one at 4.6 Å resolution, and a Pol I open complex at 3.8 Å resolution. Two modules in Pol I mediate the narrowing of the DNA-binding cleft by closing the clamp domain. The DNA is bound by the clamp head and by the protrusion domain, allowing visualization of the upstream and downstream DNA duplexes in one of the elongation complexes. During formation of the Pol I elongation complex, the bridge helix progressively folds, while the A12.2 C-terminal domain is displaced from the active site. Our results reveal the conformational changes associated with elongation complex formation and provide additional insight into the Pol I transcription cycle.

PubMed: 27867008
DOI: 10.1016/j.molcel.2016.11.013

Experimental method

ELECTRON MICROSCOPY (4 Å)