5M2M

Complex between human TNF alpha and Llama VHH3

5M2M の概要

• エントリーDOI: 10.2210/pdb5m2m/pdb
• 関連するPDBエントリー: 5m2i 5m2j
• 分子名称: Tumor necrosis factor, Llama nanobody VHH3 (3 entities in total)
• 機能のキーワード: human tnf alpha, llama nanobody, cytokine
• 由来する生物種: Homo sapiens (Human); 詳細
• 細胞内の位置: Cell membrane ; Single-pass type II membrane protein . Tumor necrosis factor, membrane form: Membrane; Single-pass type II membrane protein. Tumor necrosis factor, soluble form: Secreted. C-domain 1: Secreted. C-domain 2: Secreted: P01375
• タンパク質・核酸の鎖数: 12
• 化学式量合計: 189403.09

構造登録者

Cambillau, C.,Spinelli, S.,Desmyter, A.,de Haard, H. (登録日: 2016-10-13, 公開日: 2017-08-30, 最終更新日: 2024-01-17)

主引用文献

Beirnaert, E.,Desmyter, A.,Spinelli, S.,Lauwereys, M.,Aarden, L.,Dreier, T.,Loris, R.,Silence, K.,Pollet, C.,Cambillau, C.,de Haard, H.
Bivalent Llama Single-Domain Antibody Fragments against Tumor Necrosis Factor Have Picomolar Potencies due to Intramolecular Interactions.
Front Immunol, 8:867-867, 2017

PubMed Abstract: The activity of tumor necrosis factor (TNF), a cytokine involved in inflammatory pathologies, can be inhibited by antibodies or trap molecules. Herein, llama-derived variable heavy-chain domains of heavy-chain antibody (VHH, also called Nanobodies™) were generated for the engineering of bivalent constructs, which antagonize the binding of TNF to its receptors with picomolar potencies. Three monomeric VHHs (VHH#1, VHH#2, and VHH#3) were characterized in detail and found to bind TNF with sub-nanomolar affinities. The crystal structures of the TNF-VHH complexes demonstrate that VHH#1 and VHH#2 share the same epitope, at the center of the interaction area of TNF with its TNFRs, while VHH#3 binds to a different, but partially overlapping epitope. These structures rationalize our results obtained with bivalent constructs in which two VHHs were coupled linkers of different lengths. Contrary to conventional antibodies, these bivalent Nanobody™ constructs can bind to a single trimeric TNF, thus binding with avidity and blocking two of the three receptor binding sites in the cytokine. The different mode of binding to antigen and the engineering into bivalent constructs supports the design of highly potent VHH-based therapeutic entities.

PubMed: 28824615
DOI: 10.3389/fimmu.2017.00867

実験手法

X-RAY DIFFRACTION (2.3 Å)