5KB2

Crystal Structure of a Tris-thiolate Zn(II)S3O Complex in a de Novo Three-stranded Coiled Coil Peptide

Summary for 5KB2

• Entry DOI: 10.2210/pdb5kb2/pdb
• Related: 5K88 5K92 5KB0 5KB1
• Descriptor: Zn(II)(H2O)(GRAND Coil Ser-L12AL16C)3-, ZINC ION (3 entities in total)
• Functional Keywords: three-stranded coiled coil tris-thiolate zn(ii)s3o in de novo helical coiled coil structure, de novo designed peptide, de novo protein
• Biological source: synthetic construct
• Total number of polymer chains: 1
• Total formula weight: 4203.54

Authors

Ruckthong, L.,Zastrow, M.L.,Stuckey, J.A.,Pecoraro, V.L. (deposition date: 2016-06-02, release date: 2016-08-31, Last modification date: 2024-03-06)

Primary citation

Ruckthong, L.,Zastrow, M.L.,Stuckey, J.A.,Pecoraro, V.L.
A Crystallographic Examination of Predisposition versus Preorganization in de Novo Designed Metalloproteins.
J.Am.Chem.Soc., 138:11979-11988, 2016

PubMed Abstract: Preorganization and predisposition are important molecular recognition concepts exploited by nature to obtain site-specific and selective metal binding to proteins. While native structures containing an MS3 core are often unavailable in both apo- and holo-forms, one can use designed three-stranded coiled coils (3SCCs) containing tris-thiolate sites to evaluate these concepts. We show that the preferred metal geometry dictates the degree to which the cysteine rotamers change upon metal complexation. The Cys ligands in the apo-form are preorganized for binding trigonal pyramidal species (Pb(II)S3 and As(III)S3) in an endo conformation oriented toward the 3SCC C-termini, whereas the cysteines are predisposed for trigonal planar Hg(II)S3 and 4-coordinate Zn(II)S3O structures, requiring significant thiol rotation for metal binding. This study allows assessment of the importance of protein fold and side-chain reorientation for achieving metal selectivity in human retrotransposons and metalloregulatory proteins.

PubMed: 27532255
DOI: 10.1021/jacs.6b07165

Experimental method

X-RAY DIFFRACTION (1.89 Å)