Femtosecond Structural Dynamics Drives the Trans/Cis Isomerization in Photoactive Yellow Protein: 200 ns time delay photo-activated (light) structure

Summary for 5HD5

Related2PHY 5HD3 5HDC 5HDD 5HDS
DescriptorPhotoactive yellow protein (2 entities in total)
Functional Keywordsphotoreceptor cis trans isomerization free electron laser, signaling protein
Biological sourceHalorhodospira halophila
Total number of polymer chains1
Total molecular weight14034.72
Pande, K.,Tenboer, J.,Schmidt, M. (deposition date: 2016-01-04, release date: 2016-05-25, Last modification date: 2018-02-14)
Primary citation
Pande, K.,Hutchison, C.D.,Groenhof, G.,Aquila, A.,Robinson, J.S.,Tenboer, J.,Basu, S.,Boutet, S.,DePonte, D.P.,Liang, M.,White, T.A.,Zatsepin, N.A.,Yefanov, O.,Morozov, D.,Oberthuer, D.,Gati, C.,Subramanian, G.,James, D.,Zhao, Y.,Koralek, J.,Brayshaw, J.,Kupitz, C.,Conrad, C.,Roy-Chowdhury, S.,Coe, J.D.,Metz, M.,Xavier, P.L.,Grant, T.D.,Koglin, J.E.,Ketawala, G.,Fromme, R.,Srajer, V.,Henning, R.,Spence, J.C.,Ourmazd, A.,Schwander, P.,Weierstall, U.,Frank, M.,Fromme, P.,Barty, A.,Chapman, H.N.,Moffat, K.,van Thor, J.J.,Schmidt, M.
Femtosecond structural dynamics drives the trans/cis isomerization in photoactive yellow protein.
Science, 352:725-729, 2016
PubMed: 27151871 (PDB entries with the same primary citation)
DOI: 10.1126/science.aad5081
MImport into Mendeley
Experimental method

Structure validation

RfreeClashscoreRamachandran outliersSidechain outliersRSRZ outliers0.36490.8%7.8%1.6%MetricValuePercentile RanksWorseBetterPercentile relative to all X-ray structuresPercentile relative to X-ray structures of similar resolution