5HA5

Crystal structure of an NAD-bound oxidoreductase from Brucella ovis

Summary for 5HA5

• Entry DOI: 10.2210/pdb5ha5/pdb
• Descriptor: Brucella ovis oxidoreductase, IMIDAZOLE, 1,2-ETHANEDIOL, ... (5 entities in total)
• Functional Keywords: ssgcid, oxidoreductase, short chain dehydrogenase/reductase family, brucella ovis, nad, structural genomics, seattle structural genomics center for infectious disease, psi-2, protein structure initiative
• Biological source: Brucella ovis IntaBari-2002-82-58
• Total number of polymer chains: 4
• Total formula weight: 105663.39

Authors

Seattle Structural Genomics Center for Infectious Disease (SSGCID) (deposition date: 2015-12-30, release date: 2016-02-10, Last modification date: 2025-12-10)

Primary citation

Zupko, S.P.,Konstanty, A.T.,Mayclin, S.J.,Choi, R.,Serbzhinskiy, D.,Robles, E.,Moses, V.,Barrett, L.K.,Van Voorhis, W.C.,Edwards, T.E.,Myler, P.J.,Torelli, A.T.,French, J.B.,Hicks, K.A.
Crystal structure of a short-chain dehydrogenase from Brucella ovis with apo and coenzyme NAD + -bound protomer chains.
Acta Crystallogr.,Sect.F, 2025

PubMed Abstract: Short-chain dehydrogenases (SDRs) are a family of NAD(P)-dependent enzymes involved in redox reactions, specifically carbonyl-alcohol reductions. Here, we report the apo and NAD-bound structures of an SDR from the pathogenic organism Brucella ovis. B. ovis primarily affects sheep and other livestock, resulting in reduced fertility. Based on sequence and structural alignment, the B. ovis SDR (BoSDR) is a classical SDR. Classical SDRs have a canonical YxxxK active-site sequence in which the catalytic general base is a tyrosine residue located at position 163. In addition, the putative active site also contains a serine residue (Ser150) and lysine residue (Lys167) that are hypothesized to be involved in catalysis. BoSDR is a biological and crystallographic tetramer. In the coenzyme-bound structure, two different orientations of the NAD coenzyme are fortuitously observed, which provides insights into the conformational changes that accompany coenzyme binding. The apo and NAD-bound structures provide valuable information about the unique structural features of enzymes in the SDR superfamily.

PubMed: 41216818
DOI: 10.1107/S2053230X25009227

Experimental method

X-RAY DIFFRACTION (1.95 Å)