5D8Y

2.05A resolution structure of iron bound BfrB (L68A E81A) from Pseudomonas aeruginosa

Summary for 5D8Y

• Entry DOI: 10.2210/pdb5d8y/pdb
• Related: 5D8O 5D8P 5D8Q 5D8R 5D8S 5D8X
• Descriptor: Ferroxidase, FE (II) ION, ACETATE ION, ... (6 entities in total)
• Functional Keywords: electron transport, iron storage, iron binding, iron mobilization, oxidoreductase
• Biological source: Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228)
• Total number of polymer chains: 24
• Total formula weight: 460612.44

Authors

Lovell, S.,Battaile, K.P.,Wang, Y.,Yao, H.,Rivera, M. (deposition date: 2015-08-18, release date: 2015-09-23, Last modification date: 2023-09-27)

Primary citation

Wang, Y.,Yao, H.,Cheng, Y.,Lovell, S.,Battaile, K.P.,Midaugh, C.R.,Rivera, M.
Characterization of the Bacterioferritin/Bacterioferritin Associated Ferredoxin Protein-Protein Interaction in Solution and Determination of Binding Energy Hot Spots.
Biochemistry, 54:6162-6175, 2015

PubMed Abstract: Mobilization of iron stored in the interior cavity of BfrB requires electron transfer from the [2Fe−2S] cluster in Bfd to the core iron in BfrB. A crystal structure of the Pseudomonas aeruginosa BfrB:Bfd complex revealed that BfrB can bind up to 12 Bfd molecules at 12 structurally identical binding sites, placing the [2Fe−2S] cluster of each Bfd immediately above a heme group in BfrB [Yao, H., et al. (2012) J. Am. Chem. Soc., 134, 13470−13481]. We report here study aimed at characterizing the strength of the P. aeruginosa BfrB:Bfd association using surface plasmon resonance and isothermal titration calorimetry as well as determining the binding energy hot spots at the protein−protein interaction interface. The results show that the 12 Bfd-binding sites on BfrB are equivalent and independent and that the protein−protein association at each of these sites is driven entropically and is characterized by a dissociation constant (Kd) of approximately 3 μM. Determination of the binding energy hot spots was carried out by replacing certain residues that comprise the protein−protein interface with alanine and by evaluating the effect of the mutation on Kd and on the efficiency of core iron mobilization from BfrB. The results identified hot spot residues in both proteins [LB 68, EA 81, and EA 85 in BfrB (superscript for residue number and subscript for chain) and Y2 and L5 in Bfd] that network at the interface to produce a highly complementary hot region for the interaction. The hot spot residues are conserved in the amino acid sequences of Bfr and Bfd proteins from a number of Gram-negative pathogens, indicating that the BfrB:Bfd interaction is of widespread significance in bacterial iron metabolism.

PubMed: 26368531
DOI: 10.1021/acs.biochem.5b00937

Experimental method

X-RAY DIFFRACTION (2.05 Å)