5C66
E. Coli Alkaline Phosphatase in complex with tungstate
Summary for 5C66
| Entry DOI | 10.2210/pdb5c66/pdb |
| Descriptor | Alkaline phosphatase, ZINC ION, TUNGSTATE(VI)ION, ... (4 entities in total) |
| Functional Keywords | hydrolase |
| Biological source | Escherichia coli (strain K12) |
| Cellular location | Periplasm: P00634 |
| Total number of polymer chains | 2 |
| Total formula weight | 97477.53 |
| Authors | Peck, A.,Herschlag, D. (deposition date: 2015-06-22, release date: 2016-06-01, Last modification date: 2024-10-16) |
| Primary citation | Peck, A.,Sunden, F.,Andrews, L.D.,Pande, V.S.,Herschlag, D. Tungstate as a Transition State Analog for Catalysis by Alkaline Phosphatase. J.Mol.Biol., 428:2758-2768, 2016 Cited by PubMed Abstract: The catalytic mechanisms underlying Escherichia coli alkaline phosphatase's (AP) remarkable rate enhancement have been probed extensively. Past work indicated that whereas the serine nucleophile (Ser102) electrostatically repels the product phosphate, another oxyanion, tungstate, binds more strongly in the presence of Ser102. These results predict a covalent bond between the serine nucleophile and tungstate, a model that we test herein. The crystal structure of tungstate-bound alkaline phosphatase provides evidence for a covalent adduct model and further shows that the ligand adopts trigonal bipyramidal geometry, which is infrequently observed for tungstate in small molecules and other active sites but mirrors the geometry of the presumed phosphoryl transfer transition state. The AP active site is known to stabilize another oxyanion, vanadate, in trigonal bipyramidal geometry, but the extent to which binding of either ligand reproduces the energetics of the transition state cannot be deduced from structural inspection alone. To test for transition state analog behavior, we determined the relationship between catalytic activity and affinity for tungstate and vanadate for a series of 20 AP variants. Affinity and activity were highly correlated for tungstate (r(2) = 0.89) but not vanadate (r(2) = 0.23), indicating that the tungstate•AP complex may better mimic this enzyme's transition state properties. The results herein suggest that tungstate will be a valuable tool for further dissecting AP catalysis and may prove helpful in mechanistic studies of other phosphoryl transfer enzymes. PubMed: 27189921DOI: 10.1016/j.jmb.2016.05.007 PDB entries with the same primary citation |
| Experimental method | X-RAY DIFFRACTION (2.03 Å) |
Structure validation
Download full validation report
