5C0X
Structure of a 12-subunit nuclear exosome complex bound to structured RNA
Summary for 5C0X
| Entry DOI | 10.2210/pdb5c0x/pdb |
| Descriptor | Exosome complex component RRP45, Exosome complex exonuclease DIS3, Exosome complex exonuclease RRP6, ... (13 entities in total) |
| Functional Keywords | hydrolase, rna, nuclease, protein-rna complex, hydrolase-rna complex, hydrolase/rna |
| Biological source | Saccharomyces cerevisiae S288c (Baker's yeast) More |
| Total number of polymer chains | 12 |
| Total formula weight | 495921.43 |
| Authors | Makino, D.L.,Conti, E. (deposition date: 2015-06-12, release date: 2015-08-05, Last modification date: 2024-01-10) |
| Primary citation | Makino, D.L.,Schuch, B.,Stegmann, E.,Baumgartner, M.,Basquin, C.,Conti, E. RNA degradation paths in a 12-subunit nuclear exosome complex. Nature, 524:54-58, 2015 Cited by PubMed Abstract: The eukaryotic exosome is a conserved RNA-degrading complex that functions in RNA surveillance, turnover and processing. How the same machinery can either completely degrade or precisely trim RNA substrates has long remained unexplained. Here we report the crystal structures of a yeast nuclear exosome containing the 9-subunit core, the 3'-5' RNases Rrp44 and Rrp6, and the obligate Rrp6-binding partner Rrp47 in complex with different RNAs. The combined structural and biochemical data of this 12-subunit complex reveal how a single-stranded RNA can reach the Rrp44 or Rrp6 active sites directly or can bind Rrp6 and be threaded via the central channel towards the distal RNase Rrp44. When a bulky RNA is stalled at the entrance of the channel, Rrp6-Rrp47 swings open. The results suggest how the same molecular machine can coordinate processive degradation and partial trimming in an RNA-dependent manner by a concerted swinging mechanism of the two RNase subunits. PubMed: 26222026DOI: 10.1038/nature14865 PDB entries with the same primary citation |
| Experimental method | X-RAY DIFFRACTION (3.812 Å) |
Structure validation
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