4V5T

X-ray structure of the Grapevine Fanleaf virus

これはPDB形式変換不可エントリーです。

4V5T の概要

• エントリーDOI: 10.2210/pdb4v5t/pdb
• 関連するPDBエントリー: 2Y26
• 分子名称: COAT PROTEIN (1 entity in total)
• 機能のキーワード: virus, fanleaf disease
• 由来する生物種: GRAPEVINE FANLEAF VIRUS
• タンパク質・核酸の鎖数: 60
• 化学式量合計: 3364388.46

構造登録者

Schellenberger, P.,Sauter, C.,Lorber, B.,Bron, P.,Trapani, S.,Bergdoll, M.,Marmonier, A.,Schmitt-Keichinger, C.,Lemaire, O.,Demangeat, G.,Ritzenthaler, C. (登録日: 2011-02-01, 公開日: 2014-07-09, 最終更新日: 2024-01-10)

主引用文献

Schellenberger, P.,Sauter, C.,Lorber, B.,Bron, P.,Trapani, S.,Bergdoll, M.,Marmonier, A.,Schmitt-Keichinger, C.,Lemaire, O.,Demangeat, G.,Ritzenthaler, C.
Structural Insights Into Viral Determinants of Nematode Mediated Grapevine Fanleaf Virus Transmission.
Plos Pathog., 7:2034-, 2011

PubMed Abstract: Many animal and plant viruses rely on vectors for their transmission from host to host. Grapevine fanleaf virus (GFLV), a picorna-like virus from plants, is transmitted specifically by the ectoparasitic nematode Xiphinema index. The icosahedral capsid of GFLV, which consists of 60 identical coat protein subunits (CP), carries the determinants of this specificity. Here, we provide novel insight into GFLV transmission by nematodes through a comparative structural and functional analysis of two GFLV variants. We isolated a mutant GFLV strain (GFLV-TD) poorly transmissible by nematodes, and showed that the transmission defect is due to a glycine to aspartate mutation at position 297 (Gly297Asp) in the CP. We next determined the crystal structures of the wild-type GFLV strain F13 at 3.0 Å and of GFLV-TD at 2.7 Å resolution. The Gly297Asp mutation mapped to an exposed loop at the outer surface of the capsid and did not affect the conformation of the assembled capsid, nor of individual CP molecules. The loop is part of a positively charged pocket that includes a previously identified determinant of transmission. We propose that this pocket is a ligand-binding site with essential function in GFLV transmission by X. index. Our data suggest that perturbation of the electrostatic landscape of this pocket affects the interaction of the virion with specific receptors of the nematode's feeding apparatus, and thereby severely diminishes its transmission efficiency. These data provide a first structural insight into the interactions between a plant virus and a nematode vector.

PubMed: 21625570
DOI: 10.1371/JOURNAL.PPAT.1002034

実験手法

X-RAY DIFFRACTION (3 Å)